Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00691 ATGGTTAGAGACGATCTATACATCACCGTTCCCAGCTTCTTCCGGTGCCCCATATCCCTCGACGTCATGAAATCCCCTGTGAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGAAACAACACATGTCCCGCCACCATGCAGGTTCTCCAAACCAGGGAATTCGTTCCCAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCGGTCCGTCACCGAGTCGACTCGCCCGAGTCACCTACCTCCACCGAGTCCCAATCAGTCCTCTCCAAGGAACAAGTCCTCGTCGCTATCTCCGAATTGCAGACCCGCAGCGAGAACCGGTTCGACTCGCTCGCGAAAATCGCGCGTTTCGCGCAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGGTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAATTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATTACTACCAAAACGGAGGATCGCGAGGGGCTGAAAAACTTGATACTGAAGAGGCAGAGCGAGGGAGAAAAACAGAGCGTAGATTCTCTGCTTCTCGTTCTGCAACAAGGAAGTCATGCCTCAAAAATCGCATCGGCTAGGGTTTTGAAATCCGTCGCCGTAGACGCGGAATCGAAGCTGTTGATTGCGGAGAAAGAAGGTTTAGTATCCGAATTGCTGAATCTAATCACGCCGGAGAAAGATCCGGATCTAATCGAGAACTGTTTATCGTGCCTGGTTTCAATTTCGACGCCGAGAAGGAGCAAGATGAAGCTGGTGCGTCTTGGAGCGGTGAAGGTGTTCTCGAACCTTCTATCGGCTCTGAGCCTGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGAGCGGAGATATGCGAGGATTCAGCGTGCGTTGCGGCGATAGTGAACAAGGTTCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGTGTGTGCTATCTGTTTCGGGATCAGAAGGCGCAAGAGGCCGTTACGAAGGCTAATGGCTTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGCTCGCCGCAAGTGCGCCAAATGTCTTCGGATTTGCTTAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGACACCAAAACCACTCATATTATGCCCTTTTGA 1260 0.5254 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTREFVPNRTLQRLIQIWSDSVRHRVDSPESPTSTESQSVLSKEQVLVAISELQTRSENRFDSLAKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLEQVVTALDLVITTKTEDREGLKNLILKRQSEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLIAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSALSLSVSVTEKVLKLVETVSSTKEGRAEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00691 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pumo6g00691 419 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Pumo6g00691 419 Gene3D - 102 407 IPR011989 -
Pumo6g00691 419 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Pumo6g00691 419 SUPERFAMILY RING/U-box 5 79 - -
Pumo6g00691 419 CDD RING-Ubox_PUB 11 63 IPR045210 -
Pumo6g00691 419 SUPERFAMILY ARM repeat 115 401 IPR016024 -
Pumo6g00691 419 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pumo6g00691 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Pumo6g00691 419 PANTHER WDSAM1 PROTEIN 9 407 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00691 Pumo-Chr6 8668329 8669988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00691 1 419 U-box Gene Family AT5G64660 53.935 5.08e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00691 - - gmx:100799627 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00691 6 8668329 8669988 Pumo6g00691 6 8668329 8669988 ECH
Pumo10g01644 10 21622320 21624723 Pumo6g00691 6 8668329 8669988 ECH
Pumo6g00691 6 8668329 8669988 Pumo10g01644 10 21622320 21624723 PCT