Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00690 ATGGTTTGTTCACAAGAGAAAATGAGCTTTGATGACTCATCCATCAACTTGGGATTGGAGAGGATCAGGGAGTGCAGTAGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTGAAGAAAAATTCTCTTTGGATGAAGTGAAAGGGTGTCCCCAAGATGAAGCAGATGCAAACTTTCAAGGGAAAGTGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACACAGAGAAGCTGATTCACAAGAAGAATTTCAGGATTTTGAGATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGATCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTTGCATATGGCGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCACAGAAGACAGTACTTCTAATAGCAAAGTGGAATGTGACAACTCTTCTTCTTGGAAGAAACACTCAAGCCAACCATTCATTTTTCTTCCAAATAGTATTTTTCAAATTGAAGAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCCTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGCTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCTGATATACGAGATATCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCCGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTCCATGGAAAGAAGAAAGTATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTAAGAGAATAATGATCACATCAGAAGATTCTAAAATTCGTATATTTGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCGTAAGTCAGGAAGTCTGATGTCTGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGATGCTTCTTCGAAACAGACGAAATCCGAACGCTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCATTACCTTGGCCAGGCATGAAAGCAGCAGATCAAAGGGGCTATAGCAGTAATTCTTCAGAAATGCAAACCCAACTAGAGGCTGTTCCTGAGGCTAGAGATCAGGAACGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCATGTGTCGAGGTTCTATGACTTGGCCTGAGGAGAAACTTCCAAGATGGGATTTGCCTATAGCAGAAGATGAATATGGTCACCAGCAGTTATGTCACAAAGATACTTGCCATGACAGAAGTGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACGATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAA 1806 0.4081 MVCSQEKMSFDDSSINLGLERIRECSRAISNACILHTDQVVSEKLILSGGKAASEEKFSLDEVKGCPQDEADANFQGKVHEFSSTAEEHRHREADSQEEFQDFEMSKRKRKNWWKRFVNIRKSGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLIWTMKFSPCGQYLASGGEDGVVCIWRVTSLDKSSICFTTEDSTSNSKVECDNSSSWKKHSSQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFNPVDENYFISGSIDGKARIWGIREERVIDWADIRDIISAISYQQDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDVHGKKKVSGNKITGIQFSQKNSKRIMITSEDSKIRIFDGIELVQKYKGLRKSGSLMSGSFTSSGKHIISVGEDSHVYIWNFDDASSKQTKSERSCEYFFSKGVTVALPWPGMKAADQRGYSSNSSEMQTQLEAVPEARDQERFSLGNWFAIDGMCRGSMTWPEEKLPRWDLPIAEDEYGHQQLCHKDTCHDRSVSETWGLSIVAAGCDGTIKTFHNFGLPVRL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00690 601 SMART WD40_4 156 195 IPR001680 GO:0005515
Pumo6g00690 601 SMART WD40_4 244 282 IPR001680 GO:0005515
Pumo6g00690 601 SMART WD40_4 326 365 IPR001680 GO:0005515
Pumo6g00690 601 SMART WD40_4 285 324 IPR001680 GO:0005515
Pumo6g00690 601 SMART WD40_4 417 458 IPR001680 GO:0005515
Pumo6g00690 601 SMART WD40_4 370 416 IPR001680 GO:0005515
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 204 IPR001680 GO:0005515
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 283 - -
Pumo6g00690 601 Pfam WD domain, G-beta repeat 246 281 IPR001680 GO:0005515
Pumo6g00690 601 Pfam WD domain, G-beta repeat 162 194 IPR001680 GO:0005515
Pumo6g00690 601 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Pumo6g00690 601 PANTHER WD REPEAT DOMAIN 44 74 598 IPR040324 -
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 326 - -
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 198 - -
Pumo6g00690 601 SUPERFAMILY WD40 repeat-like 159 593 IPR036322 GO:0005515
Pumo6g00690 601 Gene3D - 68 330 IPR015943 GO:0005515
Pumo6g00690 601 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Pumo6g00690 601 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Pumo6g00690 601 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Pumo6g00690 601 FunFam WD repeat-containing protein 44 147 487 - -
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 467 IPR001680 GO:0005515
Pumo6g00690 601 Gene3D - 331 477 IPR015943 GO:0005515
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 291 IPR001680 GO:0005515
Pumo6g00690 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 333 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00690 Pumo-Chr6 8642274 8647935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00690 248 455 U-box Gene Family AT2G33340 25.688 3.05e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00690 K20241 - gmx:100819135 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00690 6 8642274 8647935 Pumo6g00690 6 8642274 8647935 ECH
Pumo6g00690 6 8642274 8647935 Pumo10g01433 10 19119155 19123943 PCT