Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00685 ATGGCTTCTCTCTTCTACCTCTCTCTTTCCCTCATCCTAACCCTCTCCTCCGCCGCGCACCACAGCCACCACCATTCACCGGCCAAACCCACCGTCACCGCCGCCGCAGCGCCGGCAATCCAACAAGCCTGCGCCTCGACGCGCTTCCCGCAGCAATGCGAAGCCGCTCTCTCCCAATCCCACGACCTCCCTCAGAACCCAACCCCTCTCCAGCTCCTCCAGTCCGCCATGGCCCTCTCCTCCGATAACCTCGCCACCGCGCAGTCGATGGCGAAGTCCCTCCTGGACGCCTCCGCCGACAGCCGCAACCGCACCGTCGCCGCCGCCACCTGCATCGAAATACTAGCGAACTCGCAGCACCGCATTTCCCTCGCCACGGACGCGCTCCCACGCGGCAGGACCAAGGACGCGCGCGCGTGGCTCACCGCCGCCCTCGCCTACCAGTACGACTGCTGGAACAGCCTCAAGTACGCCAACGACACCCAAATGGTCGGCAAAACGATGTCGTTCATCGACAACCTCGAAACTCTCTCCAGCATCGCCCTCAGCATGGCCTTCTCCTTCGACGCCTTCGGAAACGACACCGCTTCCTGGAAGGCCCCCTTGACGGAACGCAACGGGTTCTGGGAGGCCGTCGGGTCGGGTCAGCCCGGGTCCGCAGGAGGGGTTCCGTCGAATTTGATGCCCGACGTTACGGTGTGTAAGAATGGAGGGGACGGCTGTTATAAGACGGTGCAGGAGGCCGTTAACGCCGCGCCAGATAACGGCGACGGTAAGAGGTTTGTGATACACATAAAAGAAGGGGTTTATGAGGAGACCGTTAGGGTTCCGTTATCGAAGAGGAATTTGGTGTTCTTGGGCGACGGCATCGGCAAGACGATCATCACCGGCGACGCCAACGTCGGGCAACAAGGGATGACAACTTACAACTCTGCCACCGTCGCGGTGCTTGGCGATGGATTCATGGCAAAGGATCTCACGATCCAAAACACAGCAGGTCCTGATGCTCACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCTGTGATTGAGAACTGTGAATTCTTAGGCAATCAAGACACTCTCTATGCTCACTCCCTGCGCCAATTTTACAAGTCATGCCGCATTGAGGGCAACGTGGACTTCATCTTTGGAAACTCTGCTGCAGTTTTCCAAGACTGCCAGATCCTAGTTCGTCCCAGGCAAGTGAAGCCAGAGAAGGGGGAGAACAATGCTATCACAGCACATGGCAGGACAGACCCTGCACAAGCCACAGGCTTTGTTTTCCAAAACTGCTTGATTAATGGCACTGAGGAATATATGGCATTGTACCACAGCAAGCCTCAGGTGCACAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATTAATTCGTTCTTGGAGGTCCTTGTCACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTTAAGACACTTTACTATGGGGAGTTTGAGAACAAGGGTCCTGGTTCTGATTTATCTCAGAGGGTGCCATGGAGTAGCAAGATCCCTACTGAGCACGTGTTAACGTATTCGGTGCAGAATTTCATTCAAGGAAATGATTGGATTCCATCATCTGTTGGTAGCCCATCGTCCTAA 1644 0.5554 MASLFYLSLSLILTLSSAAHHSHHHSPAKPTVTAAAAPAIQQACASTRFPQQCEAALSQSHDLPQNPTPLQLLQSAMALSSDNLATAQSMAKSLLDASADSRNRTVAAATCIEILANSQHRISLATDALPRGRTKDARAWLTAALAYQYDCWNSLKYANDTQMVGKTMSFIDNLETLSSIALSMAFSFDAFGNDTASWKAPLTERNGFWEAVGSGQPGSAGGVPSNLMPDVTVCKNGGDGCYKTVQEAVNAAPDNGDGKRFVIHIKEGVYEETVRVPLSKRNLVFLGDGIGKTIITGDANVGQQGMTTYNSATVAVLGDGFMAKDLTIQNTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSAAVFQDCQILVRPRQVKPEKGENNAITAHGRTDPAQATGFVFQNCLINGTEEYMALYHSKPQVHKNYLGRPWKEYSRTVFINSFLEVLVTPQGWMPWSGDFALKTLYYGEFENKGPGSDLSQRVPWSSKIPTEHVLTYSVQNFIQGNDWIPSSVGSPSS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00685 547 NCBIfam pectinesterase inhibitor domain 7 183 IPR006501 GO:0004857
Pumo6g00685 547 CDD PMEI-like_3 46 184 - -
Pumo6g00685 547 PANTHER PECTINESTERASE 18 539 - -
Pumo6g00685 547 Pfam Pectinesterase 230 535 IPR000070 GO:0030599|GO:0042545
Pumo6g00685 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 184 IPR035513 -
Pumo6g00685 547 Pfam Plant invertase/pectin methylesterase inhibitor 39 184 IPR006501 GO:0004857
Pumo6g00685 547 SUPERFAMILY Pectin lyase-like 230 540 IPR011050 -
Pumo6g00685 547 Gene3D - 224 544 IPR012334 -
Pumo6g00685 547 SMART PMEI_2 35 184 IPR006501 GO:0004857
Pumo6g00685 547 FunFam Probable pectinesterase/pectinesterase inhibitor 51 38 187 - -
Pumo6g00685 547 FunFam Pectinesterase 224 545 - -
Pumo6g00685 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00685 Pumo-Chr6 8602208 8605102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00685 26 537 Carbohydrate Esterase AT5G09760 63.830 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00685 - - gmx:100819675 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00685 6 8602208 8605102 Pumo6g00685 6 8602208 8605102 ECH
Pumo6g00685 6 8602208 8605102 Pumo10g01651 10 21711255 21714018 PCT