Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00683 ATGGACACCAACACTAGTGCATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAACAACAGCAGCAGCATGACCATAATATTATTCTCCAAGTCCAAGACCCTATGGGTTCTGGGATTTGGCCCAACAACTATCACAGCCACAACCTTCTTCAAATGCATCAAACACCCCACACAACAACCTCATCAATCATAGCACCACCCTCCTCATCAGGGTTCCTTGGAGACATCCTAGGTGTTCACAACATAGAAGAAGATGAAGAGCCAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATTGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATTCGAAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCTGGGGGAACCAAAATGGACACTGCTTCAATGCTTGATGAGGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCATTAATCCTCACCCTTCACAACCACCACAATGCATTGGTGTTGCTAGTACTAGTACTCATAATCATCATGCTAGTACCTTGTTGTTAGCCCCTTCTTGTGATTGGCCTTTTGCACCAAATGTGTTACCCAGTTCCACCGCCACCGCCGCCATCGACATGCCGACCAGACTCGGATTCGACGGCCATGGTCATGCTTGTGATGGCTCCTCCAGCTTTAGCCATCATCATGAGGTAATCAGTGAATAA 819 0.475 MDTNTSAFTNVNSTWNLEKMETNEQQQQQQHDHNIILQVQDPMGSGIWPNNYHSHNLLQMHQTPHTTTSSIIAPPSSSGFLGDILGVHNIEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSINPHPSQPPQCIGVASTSTHNHHASTLLLAPSCDWPFAPNVLPSSTATAAIDMPTRLGFDGHGHACDGSSSFSHHHEVISE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00683 272 Gene3D - 136 198 IPR036638 GO:0046983
Pumo6g00683 272 CDD bHLH_AtIND_like 134 196 - -
Pumo6g00683 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Pumo6g00683 272 Pfam Helix-loop-helix DNA-binding domain 143 182 IPR011598 GO:0046983
Pumo6g00683 272 SMART finulus 139 188 IPR011598 GO:0046983
Pumo6g00683 272 FunFam BHLH transcription factor 136 198 - -
Pumo6g00683 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 200 IPR036638 GO:0046983
Pumo6g00683 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 212 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00683 Pumo-Chr6 8573927 8574745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00683 100 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 87.255 3.41e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g00683 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00683 - - gmx:100775296 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00683 6 8573927 8574745 Pumo6g00683 6 8573927 8574745 ECH
Pumo6g00683 6 8573927 8574745 Pumo10g01653 10 21737352 21738098 PCT