Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00676 ATGGCTAAAACGAAATTGATACCGGGATTTCGGTTCCACCCCACTGGTGTTGAGTTAGTTGTGTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTCTGTGATGGTGTCATTGCTGAACTTGACATATACAAGTATGCTCCTTGGGATCTCTCAGATAAGTCTTGTCTGAGGACTGGGGAATTGGAATGGTACTTCTTCTGCCCGCTAGAGAAGAAATATGGCAGTGGGAGCAAGATGAAGCGTGCTACTGAAATTGGGTATTGGAAAGCTACTGGGAGGGATAGAGTTGTTCAGCACAATAATCGAACTGTGGGGATGATAAAAACACTGATATTTCACACAGGTAAATCGCCTCGTGGCAAAAGAACTGATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTCGCTGACAAAGGGATTGCTCAGGATTCCTATGTGGTCTGCAAGGTATTCCAAAAGGAAGGTCTTGGTCCCAGGAATGGTGCACACTACGGGAGACCATTTAATGAGGAAGAGTGGGATGATGAAGAAATTGGAATACCCTGTGCTGCTTTGACTGCACCAGTTCCCATCTTGCCTATGACATCTGATGGTTCTGTTCCAAATGACAATCATCTCCCTGCTAGTGAATGTATTGGATCAGCATCCACATCATGTCTATCAGGGTCAGTGCCTTCACCTGGCACAGTAAATCCTACTGGTCCAAATGATCAAGCTGTTAATGATGATGATGATATTTTATCAATGCTTGATATTTTTAATGATGACAAATGGTTAGAGGTTGATAATCCTGGTCAGGAAAACTTTGTTGAAGGTGCACCACCTTCAGATGATTTTTTTGAGGGCTTGGAAGATTACTGGGCTGCTCTGGCTGGTTTCTCCTCTGGCCAGAATACTGAATTTAGCACAAACGGAACGGCTACTACAGGTGATGTTGGGAGCTCTGACGACTTGGACTTCCTAGAGTTGAATGACCTAGACACTCCATTATTCTTGCCGACTACACAACCTTGA 1023 0.4409 MAKTKLIPGFRFHPTGVELVVYFLKRKVMGKKFCDGVIAELDIYKYAPWDLSDKSCLRTGELEWYFFCPLEKKYGSGSKMKRATEIGYWKATGRDRVVQHNNRTVGMIKTLIFHTGKSPRGKRTDWVMHEHRLEDKDLADKGIAQDSYVVCKVFQKEGLGPRNGAHYGRPFNEEEWDDEEIGIPCAALTAPVPILPMTSDGSVPNDNHLPASECIGSASTSCLSGSVPSPGTVNPTGPNDQAVNDDDDILSMLDIFNDDKWLEVDNPGQENFVEGAPPSDDFFEGLEDYWAALAGFSSGQNTEFSTNGTATTGDVGSSDDLDFLELNDLDTPLFLPTTQP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00676 340 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pumo6g00676 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 192 - -
Pumo6g00676 340 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Pumo6g00676 340 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Pumo6g00676 340 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00676 Pumo-Chr6 8498039 8505791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00676 1 260 NAC Transcription Factor Family AT5G09330 49.470 1.52e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00676 NAM 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00676 - - gmx:100778933 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00676 6 8498039 8505791 Pumo10g01692 10 22303505 22307007 PCT