Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00675 ATGGCCAAAACGGAATTGACACCGGGATATCGGTTCCACCCCACTGGGGTTGAGTTAGTGGTGTACTTTCTGAAGAGGAAAGTGATGGGGCAAGAGTTACGCGATGGTGCCATTGCTGAACTTGACATATACAAGTTTGCTCCTTGGGATCTCCCAGAAAAGTCTTGTCTGGGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCTCGAAAGAAGAAATATGACAATGGGAACAGGATTAAGCGCTCTACTGAAATTGGGTATTGGAAAGCTACTGGGAAGGATAGAGTTGTTCGGCACAATAATAATACTGTGGGGATGATAAAATCACTGATATTTCACATTGGCAAATCGTCTCGTGGGAAAAGAACTGATTGGGTTATGCATGAGTATAGGCTTCAAGATGAGGACCTTGCTGACAAAGGAATTGCTCAGGATTCCTATGTAGTCTGCAAGGTATTCCAAAAGGAAGGTCTTGGTCCCAGGAATGGTGCGCAGTATGGGAGACAGTTTAATGAGGAAGAGTGGGACAATGAAGAACTGGGAATACCTTATGCTGCTTCGACTGCACAAGTTCCCATCTTGCCTGTGACATCTGATGGTTCTGTTCCAAATGGCAATCACCTCCCTGCTAGTGGATGTATTGGGTCAGCATCCAAATTATGTCTATCAGGATCAATCCCTTCTCCTGGCACAGCAAATCCTTCTGATTCAAACGTTCTTTTGGGAAATGCTGAAAACATTGCTGATGGTGATGGTGCACCACCTTCAGATGATTTTTTTGAGGGCGTGGAAGACTTCTGTGCTGCTCTGGCTGGTTTCTCCTCTGGCCAGAATACTGAATTTAGCACAAACGGAATGGCTACTACAGGTGGTGTCTGGACCTCTGATGAATCGGACTTCCAAGAGTTGATTCGGATCCTAGGGAGAATTTCATATGGTAGATTTTCTTTAGGAAATTTTTGCATTGTAAAGAATAAATAA 984 0.4431 MAKTELTPGYRFHPTGVELVVYFLKRKVMGQELRDGAIAELDIYKFAPWDLPEKSCLGTGELEWYFFCPRKKKYDNGNRIKRSTEIGYWKATGKDRVVRHNNNTVGMIKSLIFHIGKSSRGKRTDWVMHEYRLQDEDLADKGIAQDSYVVCKVFQKEGLGPRNGAQYGRQFNEEEWDNEELGIPYAASTAQVPILPVTSDGSVPNGNHLPASGCIGSASKLCLSGSIPSPGTANPSDSNVLLGNAENIADGDGAPPSDDFFEGVEDFCAALAGFSSGQNTEFSTNGMATTGGVWTSDESDFQELIRILGRISYGRFSLGNFCIVKNK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00675 327 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pumo6g00675 327 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pumo6g00675 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 179 - -
Pumo6g00675 327 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Pumo6g00675 327 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00675 Pumo-Chr6 8478839 8494883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00675 1 235 NAC Transcription Factor Family AT5G64060 53.191 4.18e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00675 NAM 5.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00675 - - gmx:100778933 427.557