Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00664 ATGATGGCTTGTGGAAGTGTCAACCTTCCTCCTGGCTTTTGCTTCTCTCCAACTGATGAAGAACTCATCCTTCACTTTCTCCATTCCAAGGCTTCTCTACCATGCCATCCCAACATCATTCCAGAGCTTGACCTCTCTCTGCTTGATCCATGGGAATTAAATGGTAAAGCGTTGTCGAGTGGAAATCAACAGTACTATTTCTTCACCAAAGTGAAGGAAAACAGATCCACAGAAAATGGGTATTGGAAGGAAATAGGAGTGGTAGAACCAATAGTATCCGCTTCTGAAAAAGTGGGGATCAAGAAGTACCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGGCACTGA 348 0.4425 MMACGSVNLPPGFCFSPTDEELILHFLHSKASLPCHPNIIPELDLSLLDPWELNGKALSSGNQQYYFFTKVKENRSTENGYWKEIGVVEPIVSASEKVGIKKYLVFNLGEAPQGH 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00664 115 SUPERFAMILY NAC domain 3 114 IPR036093 GO:0003677|GO:0006355
Pumo6g00664 115 ProSiteProfiles NAC domain profile. 9 115 IPR003441 GO:0003677|GO:0006355
Pumo6g00664 115 Pfam No apical meristem (NAM) protein 10 110 IPR003441 GO:0003677|GO:0006355
Pumo6g00664 115 Gene3D NAC domain 18 115 IPR036093 GO:0003677|GO:0006355
Pumo6g00664 115 PANTHER NAC TRANSCRIPTION FACTOR 56 9 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00664 Pumo-Chr6 8364673 8365214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00664 5 114 NAC Transcription Factor Family AT1G61110 48.333 9.59e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00664 NAM 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00664 - - gmx:100779578 225.328