Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00657 ATGGAAGATGAGAACCATGGCACTTTGCCAAATGGATTCAACACAGGAAGCCCCGAAAGCCCTTGCTTAAAGACAAGCACCATCACCACCACCCCCACCACACAACACAACAACAACAACAACAATAACAATCATCACAACCATAGCAACAAAGAACAGGACCGGTTTCTCCCTATAGCCAACGTGGGAAGAATCATGAAAAAAGTGATTCCCCCCAACGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTCTCCGAGTTCATAAGCTTCGTGACCGGGGAAGCTTCTGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGAGACGATGTCATATGGGCCATCACAACCCTAGGCTTTGAGGATTATGTTGAACCCTTGAAAACTTACCTCCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTACGTTCTGAACAAAGGCTACAACAGCATCAACATCAACAACACCATAATAATATTAATCATGACGAAAATAATCAACCATTCAATGGTGCATATGCCACATCAAATCTCATTTCTCAGCCTCCCTATGTGGCCACTGATCAGAAGTTCTCACTACCATTCTCCCCAAACTCGATTCAGAATCAGCTACGGCAGCAAGACCAGATTGATTCAGTGGGGCACAGCTGGTACGAATAA 693 0.4315 MEDENHGTLPNGFNTGSPESPCLKTSTITTTPTTQHNNNNNNNNHHNHSNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEKLNIPKQLRSEQRLQQHQHQQHHNNINHDENNQPFNGAYATSNLISQPPYVATDQKFSLPFSPNSIQNQLRQQDQIDSVGHSWYE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00657 230 ProSitePatterns NF-YB/HAP3 subunit signature. 87 103 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo6g00657 230 MobiDBLite consensus disorder prediction 8 46 - -
Pumo6g00657 230 MobiDBLite consensus disorder prediction 172 186 - -
Pumo6g00657 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 120 IPR003958 -
Pumo6g00657 230 SUPERFAMILY Histone-fold 53 171 IPR009072 GO:0046982
Pumo6g00657 230 Gene3D Histone, subunit A 44 181 IPR009072 GO:0046982
Pumo6g00657 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 178 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo6g00657 230 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Pumo6g00657 230 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Pumo6g00657 230 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Pumo6g00657 230 FunFam Nuclear transcription factor Y subunit B-3 45 170 - -
Pumo6g00657 230 MobiDBLite consensus disorder prediction 155 186 - -
Pumo6g00657 230 MobiDBLite consensus disorder prediction 1 51 - -
Pumo6g00657 230 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00657 Pumo-Chr6 8254042 8254734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00657 51 224 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.111 3.56e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo6g00657 CBFD_NFYB_HMF 7.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00657 K08065 - gmx:100778216 369.392