Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00651 ATGGCGAATAACAACAAGAGCGCTAAGAAACCAATGAGTCTCAACGATAGTCACTATCGCTTCCTCCAAGAGCACTCTGCTCCTCCCAAACCCTCATCCAAACCCTTCGATGAAGAATCGATCGAAGCCTCCACCCGAAAACAACAACAACACGACGAAAACATCCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCATTTGGGTTAAACTCGGACGAGAAACACCAACCAAACAACGAACAACAAGCTTCATCCAACGATATTCCCCAATTTTCGCTTAACTTTACTCCTAGGCAAAACTCCGACGAGAAACATGAACCAATCAAGTTTCATAATGATGAAGAAGAAGAAGAAGAAGAAGCAGCTCCACACGACGTTGTTAATTTCCCCCCTAAGGAAGAAAAGAAGACCAAGGTGAAAGTACAAGGGCGGCGCCGCCTCTGCAAGGTTGTGCACGAAGATGCAGGCAAAAGTGTGGCGGTTGATGAGTCCCAGTTTGATGAACTCATCGACCTTGATTCTCCGATTCCGGCGCCGAGAAAGGTGATCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGAATGAGCTGAACTCCAAGTTTGAGTTACTGTCAGTTGAGAGGAAGCCAAGGCCGAAGCATGTTGAGGGTCTGGTTGGAGGGAAAAAAAGTTGTGAGGATGAGGGTTCAGAGTTTGGGAGTGCAGGGTCTTCGTTTTCTCCACAACAGGAGAGCTTGTCAGAGGGTACTAAGAATGATGGGGGTGGTACTGAGTATGATTCAGATGATTCTGTTCAAGAGTTGGATCATTTTGAGCCTGAGAATGATGGATCTATAACTTTGACGGGCCCCAGATCAACTTATAAGTTGCCTGCTAAAATTGCAAAAATGTTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATATGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGCTTTGGTTGTTGCCCCCAAAACCTTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTTTCCGAGAAGACAAGAGAATATTTTGGAACTTCTACCAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAATAATTCTAAGTCCTTACGGGGGAATAATTATTATGATGATGAGGAAAGTGAAGATGGAGCTACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAAAACCCAAGCACGCAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGCGGCACGCCTTTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGCGACAACAAATGGTTCAAAGAAAAATTTGAAACGCCCATACTTCGTGGAAATGACAAACATGCTTCTGACAGGGAGAAGCGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAGTCAAGATGATGAGAAAACAACTGCAAAACTTTCTCAGAAACAAGAGATCATTGTGTGGCTTCGACTGACCATTGTTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTAACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGGCACAGATAAGTTTAAAGATGAGCAAGAAGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGCGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAGTATCCAAAGGTTATGACTTTTTACGAATTGATGGGACAACAAAAGCCAGTGACAGACTAAAGATTGTTGATGATTTCCAAGAAGGTATTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGGGCATATCGAATTGGTCAAAAGAAAGATGTTCTTGTATATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCGCCAGTTCGAGCTGATCCTGAGGATGATGAAGTTACAAGGAATCATGGGACTAAATATGTTGGAACTTCAAGATCATCTTCAAATGAGCATGTTGCTTATGGCCCCGAGTTTGCATTTAATCCCAAGGATGTTAGGACAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGCGTATCTCTCAAACACTCTCAAATGCGGCGATGATTTCTAAATTACCTGACAAGGGCGAGAAACTACAAAAACGGCTTGCGGACTTGAATTTAGAGCTCGCTGAACTGAAGAGGGAAGAAAGAAATGTGGTTGATTTGGATGATTTTACTACTGAATTTCAACGGGTGTTGAATGTATAG 3030 0.4251 MANNNKSAKKPMSLNDSHYRFLQEHSAPPKPSSKPFDEESIEASTRKQQQHDENIPQFSAITDFDSPFGLNSDEKHQPNNEQQASSNDIPQFSLNFTPRQNSDEKHEPIKFHNDEEEEEEEAAPHDVVNFPPKEEKKTKVKVQGRRRLCKVVHEDAGKSVAVDESQFDELIDLDSPIPAPRKVIQIEESGGKNEIRDILNELNSKFELLSVERKPRPKHVEGLVGGKKSCEDEGSEFGSAGSSFSPQQESLSEGTKNDGGGTEYDSDDSVQELDHFEPENDGSITLTGPRSTYKLPAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYYDDEESEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFETPILRGNDKHASDREKRVGSSVAKELRDRIQPYFLRRLKSEVFSQDDEKTTAKLSQKQEIIVWLRLTIVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMHIADVAGTDKFKDEQEVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLVSKGYDFLRIDGTTKASDRLKIVDDFQEGIGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVRADPEDDEVTRNHGTKYVGTSRSSSNEHVAYGPEFAFNPKDVRTSKKGSSPSSAGKLTESEIKDKIKRISQTLSNAAMISKLPDKGEKLQKRLADLNLELAELKREERNVVDLDDFTTEFQRVLNV 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00651 1009 Pfam SNF2-related domain 306 610 IPR000330 GO:0005524|GO:0140658
Pumo6g00651 1009 Pfam Helicase conserved C-terminal domain 660 772 IPR001650 -
Pumo6g00651 1009 Coils Coil 969 996 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 926 940 - -
Pumo6g00651 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 540 IPR027417 -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 124 139 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 219 268 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 50 99 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 219 234 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 236 259 - -
Pumo6g00651 1009 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 663 822 IPR001650 -
Pumo6g00651 1009 PANTHER SNF2/RAD54 FAMILY MEMBER 57 988 - -
Pumo6g00651 1009 SMART helicmild6 689 772 IPR001650 -
Pumo6g00651 1009 FunFam Protein CHROMATIN REMODELING 24 282 560 - -
Pumo6g00651 1009 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 490 IPR014001 -
Pumo6g00651 1009 Gene3D - 563 859 IPR027417 -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 1 139 - -
Pumo6g00651 1009 CDD SF2_C_SNF 652 783 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 31 49 - -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 923 942 - -
Pumo6g00651 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 836 IPR027417 -
Pumo6g00651 1009 SMART ultradead3 298 501 IPR014001 -
Pumo6g00651 1009 MobiDBLite consensus disorder prediction 886 909 - -
Pumo6g00651 1009 Gene3D - 287 562 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00651 Pumo-Chr6 8181030 8189830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00651 296 826 RAD5 or RAD16-like Gene Family AT1G02670 25.763 3.26e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo6g00651 SNF2_N 3.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00651 K20093 - gmx:100779283 1793.86