Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00640 ATGCAAGGAGAATTGGAATTACCACCCGGGTTCAGATTCCACCCCACTGACGATGAGCTCGTGAATCACTACTTGTGTAGGAAGTGTGCTGCACAAACCATTGCTGTTCCCATCATCAAAGAAATTGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGGGACCGAAAATACCCAAACGGATCGCGACCAAACCGGGCGGCCGGAACCGGGTACTGGAAGGCAACCGGAGCGGACAAACCGATCGGAAAACCGAAAGCCCTTGGAATCAAGAAGGCCCTCGTGTTCTACGCGGGCAAAGCCCCAAAGGGAGTGAAGACCAATTGGATCATGCACGAATATCGCTTAGCCAACGTTGATAGATCTGCCTCCAAGAAAAACAACAACAACTTAAGGCTTGATGATTGGGTGCTGTGCCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATGGTGGTGTTGGGGTGGTGGATCAGAAAGTGGCAAAGTTATCAGAGGAGGAGGTTCAGTTCCAGCACGAGACCAAACCCGAGATCAAGATGTACGGCCACGATGGTTTCAGGAACGACCAATTGTACATGGACACGTCGGATTCGGTGCCGAGGTTGCCCACGGATTCAAGCTGCTCCGAGCACGTGGTCTCGCCGGATGGCACGTGCGAGAGGGAGGTGCAGAGCGAGCCCAAGTGGAATGATCTCGAGTTGGGCCCGGACCCAGTTTCGGGGTTCGATTTTAACTTCATGGACCTGTCCTCAGATGACCCTTTTGCCCCTCAGGTTCAGTACCAAATGAACCAGCTCTCACCGTGGCAGGACTTGTTCGCGTACCTACCCAAGACATTTTGA 894 0.5145 MQGELELPPGFRFHPTDDELVNHYLCRKCAAQTIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYNGGVGVVDQKVAKLSEEEVQFQHETKPEIKMYGHDGFRNDQLYMDTSDSVPRLPTDSSCSEHVVSPDGTCEREVQSEPKWNDLELGPDPVSGFDFNFMDLSSDDPFAPQVQYQMNQLSPWQDLFAYLPKTF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00640 297 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Pumo6g00640 297 ProSiteProfiles NAC domain profile. 7 159 IPR003441 GO:0003677|GO:0006355
Pumo6g00640 297 PANTHER NAC TRANSCRIPTION FACTOR 56 7 205 - -
Pumo6g00640 297 FunFam NAC transcription factor 16 163 - -
Pumo6g00640 297 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Pumo6g00640 297 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00640 Pumo-Chr6 8058356 8060547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00640 1 297 NAC Transcription Factor Family AT1G01720 61.794 6.34e-121 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00640 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00640 - - gmx:100170751 583.948