Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00635 ATGGGCAGAGAAAATGCGTCAGCAATGGCAAAGGAAGAAGTCAGTGATGATGCTTCCTCGAGTGTTGAGAATGGGGATTTAGAATCTCATGGTCGAATTAGTCTCGACAAGGAGACAGACTTGGGAATTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCCGCACTAGAATTTTTGGGCATCACTCCAGGTTCAGAAATCTGTAAAAGCAAGGGGGAAGTAGGGTCTGATGGTGATGGAATTCCCAAAAATATGTCTCTTAACAGAAATAATGAAAAAAATACTGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCACTTGTAAAAGCGATTTGGAACTTGGTTTGGCTCATCAAGATAAATTAGTTGAACTTGGATGTTCTTGTAAAAACGACCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGGCATATAGCAAATAATATCAGAATTTCTGACTTCAATAAGGTTGTTAGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGGGATCCTGGTGCTGCACAAGTTCATGCAAATGCTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAATACCAGTCACAACAACAACATTAGCAGTGTGGACACAGTTTCACAGATTGTTTCTGAGCAGCCTTTGAATATTGTTACTGAAGATGCTGCCCCCGTACAGAATCCTGCAACCAAGTGGGCCGTGGAGGGTACAGGGATCCTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGTGTTTGTGCTTTAGCCGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1086 0.4365 MGRENASAMAKEEVSDDASSSVENGDLESHGRISLDKETDLGICRVCQCTESDKRADAALEFLGITPGSEICKSKGEVGSDGDGIPKNMSLNRNNEKNTGMVEFVSPDGEVFTCKSDLELGLAHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVSALKEYEVLRERTASGDPGAAQVHANAGVDPDAVAAIRRQRLSEIALWFCPHNTSHNNNISSVDTVSQIVSEQPLNIVTEDAAPVQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00635 361 MobiDBLite consensus disorder prediction 1 31 - -
Pumo6g00635 361 PANTHER ZINC FINGER, RING-CH-TYPE 11 328 - -
Pumo6g00635 361 SUPERFAMILY RING/U-box 126 165 - -
Pumo6g00635 361 SMART ringv_2 114 163 IPR011016 GO:0008270
Pumo6g00635 361 ProSiteProfiles Zinc finger RING-CH-type profile. 106 169 IPR011016 GO:0008270
Pumo6g00635 361 Pfam RING-variant domain 128 162 IPR011016 GO:0008270
Pumo6g00635 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00635 Pumo-Chr6 8042998 8046901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00635 1 351 C3H Transcription Factor Family AT5G08750 63.260 1.69e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00635 - - gmx:100805323 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00635 6 8042998 8046901 Pumo6g00635 6 8042998 8046901 ECH