Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00622 ATGTCACTTGTAGAAACGGGCATGTCATATCCCTGGCCTTGGCCTTCAGTTGGATTTTCTGGAACACTTTCTCCCTCAATTACCAAATTGAAATATTTGTCAAGCTTGGAATTGCAGAACAACAATCTTTCAGGACCCTTGCCTGATTACATTTCCAACTTGACAGAGCTACAATATCTAAATCTTGCTGACAATAATTTCAATGGTTCTATACCAGCTAAATGGGGTGAACTACCCAATCTAAAGCATCTGGATCTTTCATCTAATGGTCTTACTGGAAGTATCCCAGTGCAACTCTTTTCAGTTTCATTGTTTAACTTTTCAGATACGCACCTTCAGTGTGGCCCTGGCTTCGAGCAGCCCTGCGCTTCTAAATCTGAAAATCCAGCTTCAACCCACAAATCAAAATACGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTTGGGGCTATCCTTACGTATCGACGCCATCAAAAGCATAGGCGCAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGAAAAATTTCTTTCGGGCAATTGAGAAGATTTTCTTGGCGTGAACTCCAATTTGCCACTAAGAATTTCAGTGAAGGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTCGCTGTGAAACGCCTCATTGATTATCATAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACAACCACAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGTGTAGCATATAGACTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGATTGGCCAACAAGGAAACGCGTGGCTTTTGGCACAGCTCATGGTTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTTGATGATGAATTTGAAGCTGTGCTAGGTGATTTTGGTCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTCACCACTCAAGTAAGGGGCACAATGGGTCACATTGCCCCAGAGTATTTGTCCACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGCGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGCTGCTGAGAGAAAAAAGGTTGGAGGACATTGTGGATAGAAATTTGGAGAGTTATGATCCAAAGGAAGTTGAGACCATTCTTCAGGTTGCATTGCTTTGCACCCAAGGCTATCCTGAGGATCGTCCAACCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1581 0.4238 MSLVETGMSYPWPWPSVGFSGTLSPSITKLKYLSSLELQNNNLSGPLPDYISNLTELQYLNLADNNFNGSIPAKWGELPNLKHLDLSSNGLTGSIPVQLFSVSLFNFSDTHLQCGPGFEQPCASKSENPASTHKSKYAKIVRYASCGAFALLCLGAILTYRRHQKHRRKSDVFVDVSGEDERKISFGQLRRFSWRELQFATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLESYDPKEVETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00622 526 ProSitePatterns Protein kinases ATP-binding region signature. 210 232 IPR017441 GO:0005524
Pumo6g00622 526 Gene3D Transferase(Phosphotransferase) domain 1 281 497 - -
Pumo6g00622 526 ProSiteProfiles Protein kinase domain profile. 204 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00622 526 FunFam Somatic embryogenesis receptor kinase 1 173 280 - -
Pumo6g00622 526 FunFam Somatic embryogenesis receptor-like kinase 1 281 497 - -
Pumo6g00622 526 Pfam Protein kinase domain 205 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00622 526 Gene3D Phosphorylase Kinase; domain 1 173 280 - -
Pumo6g00622 526 SMART serkin_6 204 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00622 526 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 487 - -
Pumo6g00622 526 SUPERFAMILY L domain-like 17 103 - -
Pumo6g00622 526 ProSiteProfiles Leucine-rich repeat profile. 80 102 IPR001611 GO:0005515
Pumo6g00622 526 Pfam Leucine rich repeat 33 91 IPR001611 GO:0005515
Pumo6g00622 526 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 112 - -
Pumo6g00622 526 SUPERFAMILY Protein kinase-like (PK-like) 183 478 IPR011009 -
Pumo6g00622 526 Gene3D Ribonuclease Inhibitor 10 124 IPR032675 -
Pumo6g00622 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00622 Pumo-Chr6 7908620 7915091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00622 18 521 Receptor kinase-like Gene Family AT5G65240 61.265 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo6g00622 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00622 - - gmx:100800886 993.416