Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00621 ATGGGCACTCCTCCGGTGAATTCGTTGCCAATAGCATACCAAGCATGGACAAGCCTCGCAGTGCCAGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTATCAGCCACCTTAGTGGGGATTCAGAGCATGCCGGGCCTGGTGATCCTCTACGGAAGCATTGTGAAAAAGAAATGGGCCGTGAACTCTGCCTTCATGGCTCTCTATGCTTTTGCGGCGGTTATCATCTGTTGGGTTACGTGGGCCTACAAGATGTCGTTTGGGGAGAAGCTGCTGCCGTTTTGGGGAAAAGCTGGGCCGGCGTTGGGCCAGAGGTTTCTGATCAAGCAGGCGGGCCTGCCCGCGACGCCGCATTATTTTAAGAACGGGGAATTGGAGACGGGTGAGATTACGCCGTTTTATCCGATGGCTACTATGGTGTGGTTCCAGGGTGTGTTTGCGGCCATTGCGCTTGTTATATTGGCTGGTTCGGTGCTGGCTAGGATGAACTTCAAGGCGTGGATGATGTTTGTGCCGCTTTGGCTCACTTTCTCTTACACCATTGGTGCGTTTAGCTTGTGGGGTGGGGGGTTCTTGTTCCACTGGGGTGTTATGGACTACTCTGGTGGCTATGTCATTCATCTCTCTTCCGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCACGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAACGTGTTACTAACGTTGGCGGGGGCAGGGCTACTATGGTTGGGATGGGCTGGTTTCAACGGAGGAGATCCTTACGCCGCAAACACAGATTCATCGATGGCGGTGCTGAACACCAACATCTGCGCCGCCACGAGCCTCCTCGTATGGACGTGGCTTGACGTTATTTTCTTCAAGAAACCCTCAGTTATTGGAGCCGTTCAGGGCATGATTACTGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTTGTTCAAGGATGGGCTGCTATAGTGATGGGAGTTCTTTCAGGCAGTGTCCCATGGTTCAGCATGATGGTATTAGGGAAAAAGTTGAAATTGTTTCAAATGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTTGGAGGCATACTCACTGGCCTATTTGCTGAACCACGTCTAAGTGCACTCTTTCTACCTGTCACCAATTCCAAGGGAGGAATCTATGGAGGCCCTGGAGGAATCCAAATCCTTAAACAAATAGTGGGGGGTTTGTTCATCATTGGGTGGAACCTTGTGGTCACTTCAATTATTTGTGTGGTTATTAGCTTCATAGTTCCACTGAGAATGACAGAGGAAGAGGTTCTCATTGGGGATGATGCAGTTCATGGGGAAGAGGCTTATGCACTCTGGGGTGATGGAGAGAAACTTAGCATCTACAAAGATGATACCACACACCATGGAGTGGTGTCTAGTGGTGCCACTCAAGTGGTCTAG 1458 0.5096 MGTPPVNSLPIAYQAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQRFLIKQAGLPATPHYFKNGELETGEITPFYPMATMVWFQGVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLKLFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSALFLPVTNSKGGIYGGPGGIQILKQIVGGLFIIGWNLVVTSIICVVISFIVPLRMTEEEVLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGVVSSGATQVV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00621 485 Gene3D Ammonium transporter AmtB like domains 11 458 IPR029020 -
Pumo6g00621 485 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
Pumo6g00621 485 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Pumo6g00621 485 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Pumo6g00621 485 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Pumo6g00621 485 PANTHER AMMONIUM TRANSPORTER MEP2 17 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pumo6g00621 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Pumo6g00621 485 FunFam Ammonium transporter 12 458 - -
Pumo6g00621 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Pumo6g00621 485 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pumo6g00621 485 SUPERFAMILY Ammonium transporter 24 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00621 Pumo-Chr6 7892840 7898559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00621 137 474 Inorganic Solute Cotransporters AT2G38290 70.710 2.32e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00621 K03320 - gmx:100785993 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00621 6 7892840 7898559 Pumo6g00621 6 7892840 7898559 ECH