Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00613 ATGCCACTTTTAAGGAGAAAGCCTTTTGCCTTGGCCGAGCCTCCTGAGGATTTGAAGCCAGATGAGCCTGTTTACCAGATTCGATTTACAAAAGAAATCTTTCAAGATTATCATAGTGATTATTTGAAGCGATTGAATCTATACCGCCAGAGGGTTTGGACGTGTAAAGTCACTGGAAAAATGGGCTTGACTTACGAAGAGGCTTTGGTGTCCAAACAACATGCTACCGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTATTGCTTTAAGGATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGGGGTACATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGACACATTCTCTTATGAGGTAGCTTGGCTCGACAAAAACAAGAAAATAAGTGAACAAGCAGAAGTCAGCGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGTGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGAATATCAACTGACATTCCTGAGGAGTTAAGAGGAAGGGTTTTTTACAAAGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACTGTAAAGGGAAGAAGTTGGATGGGGCACAAGTGGATGATTCTGGCCAAGAGAAAGAAAATGGTCAACACAAGGATGAAGCAATCAAATACCCCATTGATGATCTATTGGTGAGGCCTAGTCCAGATGATCCTGTTTTCACTGCTCGTCCTTCTCCATCCAAAGACTTCAATATTCCAATGAGTTGTGTAGGGGATCTCTTGATGGTTTGGGATTTTCTTAGTTCCTTTGATAGACTGTTGCACCTGAGCCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGCTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGATGACGATGAATACTCTTTGTCTGTGAAGAACCGAAAACTGAAATCTAAGATTACAACAAATAATTGGACAGAATATTTATGCCATTTTCTAGAGATGATCAATATCCCTGAACTACGGCACCATGAAACAACCATAAAACGGGGACATTATGGCCTTGTAGATGCGAATGCCAAATTAGAAATCTTAGGCCAATTGGTCAATCGAGCCCTTGAAACTGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGAGGAGAGGCATTGGAAAATGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGAAAGCAATGGATTTGTGGATGGGCATCATCTGAACGGTACAGATGTCCTATCAAACAATAATCATGGTATACAAAATGGAGACGCGGGAGAGAAAAGAATTGTAGAGATAGAACCATCTGGGCAAAACGATCCAATGGGTAGAAGTGGGATCAAGAATTTAAATCCTGCTTCGAAAAAGACACCTAAGAAGTTAAATTCAGAGCTGAAAGAACCAACGGAAAATGGAAAAGAATTATCCAGAAAGGAATCACCGAAACAGTTGAAGGCTGATAAGGATTCATCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTCGAACGGGAGATGGAGAAACGATTTATTCGTAGAAGCCCATTAGGTAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTTATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAACTAGAAAAATATTATAGTAGAATATGCTCAGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGTTTATTGATGAGTCTGTGCTTCGTAGGTCTACTCGTGTTAGAGCTCAACCTAGGCAGAACCCTGCCGATGCTTGCCTCAGATATAAAAACAAGTACTATAAAGAAGAATAG 2142 0.4052 MPLLRRKPFALAEPPEDLKPDEPVYQIRFTKEIFQDYHSDYLKRLNLYRQRVWTCKVTGKMGLTYEEALVSKQHATEKVQQFPKELMTIALRIIQYSMLPLKDLADSIGEKLQERLFVGAELHGKKDDGVHPCKILKVIQKGVDTFSYEVAWLDKNKKISEQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFYKDGLLVCSKKRKNEESLEDTDNCKGKKLDGAQVDDSGQEKENGQHKDEAIKYPIDDLLVRPSPDDPVFTARPSPSKDFNIPMSCVGDLLMVWDFLSSFDRLLHLSPYSLEDFENAICHKDSNVALLVESHAALFRLLIKDDDEYSLSVKNRKLKSKITTNNWTEYLCHFLEMINIPELRHHETTIKRGHYGLVDANAKLEILGQLVNRALETAIFREKLDEIIEQRQALGATRRGEALENGRRRREEKERLKAESESNGFVDGHHLNGTDVLSNNNHGIQNGDAGEKRIVEIEPSGQNDPMGRSGIKNLNPASKKTPKKLNSELKEPTENGKELSRKESPKQLKADKDSSEKNSKEQRKEYFEREMEKRFIRRSPLGKDRDYNRYWWFRRYGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERALRKQLEKYYSRICSELQKRSKDLMHRFIDESVLRRSTRVRAQPRQNPADACLRYKNKYYKEE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00613 713 MobiDBLite consensus disorder prediction 458 481 - -
Pumo6g00613 713 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Pumo6g00613 713 MobiDBLite consensus disorder prediction 516 582 - -
Pumo6g00613 713 MobiDBLite consensus disorder prediction 523 539 - -
Pumo6g00613 713 ProSiteProfiles DDT domain profile. 304 365 IPR018501 -
Pumo6g00613 713 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Pumo6g00613 713 MobiDBLite consensus disorder prediction 238 268 - -
Pumo6g00613 713 Pfam DDT domain 305 362 IPR018501 -
Pumo6g00613 713 SMART testlast3 304 365 IPR018501 -
Pumo6g00613 713 MobiDBLite consensus disorder prediction 540 582 - -
Pumo6g00613 713 Coils Coil 460 480 - -
Pumo6g00613 713 Coils Coil 710 713 - -
Pumo6g00613 713 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 593 659 IPR028941 -
Pumo6g00613 713 MobiDBLite consensus disorder prediction 455 504 - -
Pumo6g00613 713 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 121 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00613 Pumo-Chr6 7731556 7736953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00613 572 658 Homeobox Transcription Factor Family AT1G28420 38.542 1.17e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo6g00613 WAC_Acf1_DNA_bd 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00613 - - gmx:100789956 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00613 6 7731556 7736953 Pumo6g00613 6 7731556 7736953 ECH
Pumo6g00613 6 7731556 7736953 Pumo10g01774 10 23376831 23378004 PCT