Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00612 ATGGCATCTGCTATGGTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCTGCTTCTTGGTCTTTGTTGTCTCGCCATTCCTCAATCCACAACCCTCTCTCTGTGCCTGTTTCTTCCTTTCATAGTGAAGCTGTTGGTGGTGGATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAGGCCTGTGGAGTATGCCACTCTGATCTGCATGTTATGAAAGGCGAAATTCCGTTTTCCAGTCCTTGTGTTCTGGGGCATGAGATTACCGGTGAGGTTGTTAAACATGGACCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCTTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGGAAAACCAGCATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTAATACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCCTACGGTGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATAATTGAAATTACTGGTGGAAAAGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGCACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGACATAAACCGGCTTGTTCGCAGAAAGATACAAATTATTGGTTCATATGGAGGCAGGGCTAGGCAAGATCTTCCAAAGCTAATTAGACTGGCAGAAACAGGTATCTTCAATCTCAGCCATGCTGTTTCTAGAACATACACCTTTGAGGAGGCAGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCCGTGATCGAGATAATATAG 1278 0.4546 MASAMVRRNIITHYSKFAASWSLLSRHSSIHNPLSVPVSSFHSEAVGGGLPSYMRGAVYWEPNKPLTIEEFNMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFSSPCVLGHEITGEVVKHGPLTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAFMYSMGGLAEYCVVPANGVSVIPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDEKLQKAKTFGATHTVNSAKEDPIEKIIEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQIIGSYGGRARQDLPKLIRLAETGIFNLSHAVSRTYTFEEAGKAFQDLNEGKIVGRAVIEII 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00612 425 FunFam Alcohol dehydrogenase (Zinc) 58 245 - -
Pumo6g00612 425 FunFam Sorbitol dehydrogenase 231 369 - -
Pumo6g00612 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 216 389 IPR036291 -
Pumo6g00612 425 Gene3D - 231 368 - -
Pumo6g00612 425 SUPERFAMILY GroES-like 50 257 IPR011032 -
Pumo6g00612 425 Pfam Zinc-binding dehydrogenase 254 385 IPR013149 -
Pumo6g00612 425 Gene3D - 58 414 - -
Pumo6g00612 425 Pfam Alcohol dehydrogenase GroES-like domain 79 209 IPR013154 -
Pumo6g00612 425 CDD Zn_ADH10 54 423 - -
Pumo6g00612 425 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 53 422 - -
Pumo6g00612 425 SMART PKS_ER_names_mod 61 422 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00612 Pumo-Chr6 7721921 7726642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00612 71 424 Monolignol Biosynthesis Gene Families AT4G37990 25.978 2.07e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00612 - - gmx:100802431 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00612 6 7721921 7726642 Pumo6g00612 6 7721921 7726642 ECH