Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00608 ATGGATAAGTATGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGCCAAAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGATCCCTTCGGCACCCCAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCCACTCATTTAGCCATAGTGATGGAGTATGCGGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATTTCTGGTGTACATTACTGCCATGCCATGCAAATATGTCACAGAGATTTGAAGCTAGAAAATACCCTTTTGGATGGAAGCCCTGCACCCCGCCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCATTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGGGAGTATGATGGCAAGTTGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCTTATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGACTGCAGACACCTCCTTTCTCGTATTTTTGTAGCAAATCCATTAAGGAGAATCACTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGAGAGCTAACTGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAACCCAAGCTTTTCTGTTCAGAGTGTGGAGGAGATAATGAAAATTGTGGGAGAGGCAAGGGACCCTCCTCCAGTATCTAGGCCTGTCAAAGGTTTCGGCTGGGAAGGCGAAGAGGATGAAGGGGAAGAAGATGTGGAGGAAGAGGAGGACGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAGTTTCAGATCAGTTAA 1056 0.4479 MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRPVKGFGWEGEEDEGEEDVEEEEDEEDEYDKRVKEVHASGEFQIS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00608 351 MobiDBLite consensus disorder prediction 300 351 - -
Pumo6g00608 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Pumo6g00608 351 SUPERFAMILY Protein kinase-like (PK-like) 2 292 IPR011009 -
Pumo6g00608 351 Coils Coil 318 345 - -
Pumo6g00608 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Pumo6g00608 351 PANTHER SERINE/THREONINE KINASE 3 295 - -
Pumo6g00608 351 MobiDBLite consensus disorder prediction 316 335 - -
Pumo6g00608 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pumo6g00608 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00608 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Pumo6g00608 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00608 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00608 351 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Pumo6g00608 351 CDD STKc_SnRK2 3 259 - -
Pumo6g00608 351 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00608 Pumo-Chr6 7691485 7695403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00608 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.963 1.57e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pumo6g00608 Pkinase 3.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00608 K14498 - gmx:547968 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00608 6 7691485 7695403 Pumo10g01778 10 23407508 23410962 PCT