Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00605 ATGGGTAGAAATCCTTGCTGTGACAAAGAGCAAATAAACAAAGGACCTTGGTCCAAAGAGGAAGATGAACTCCTCATCAACTACATCAACCTTCATGGGGAAGGCAATTGGAGATCCATTCCCAAAGTAGCAGGCTTGCTTCGATGTGGCAAAAGTTGTAGACTCAGATGGATGAATTACCTAAGACCCAATCTCAAGAAAGGGGACTTCACTAAAGAAGAAACTGACCTCATCATTCACCTCCATAGCTTACTTGGAAACAAATGGTCTCAAATAGCTACAAGTTTACCCGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACCCACCTCAAGCGTTACCTCTATGCCCTAGGAATTGACCCTATAACCCATAAACCATTCAAGGACGCCACCAACACCACAACTCCACCAACTAATTCTCAAGTGTCTATGGTCACCACCACAAGCAAGAACGGAACTAACAACAACACTAGCAGCTTCACCACCGAAATCAGCCCCCACATCTATTATTTTAATGTCTTTCTCAATTCAAAGGTGCATATAAGCACTGATGATTATTCAGCTGATGGTGAAGACTCAAATAGCAGCAGTGGTGTTACCATAGAGGAAGCTTATCCTCAAGTCAACTTAGAGCTTTCCATAGCTCCACCCACCCTGCAGCCTCAAGATGCTTCTATGAACCCTAAATGGTTGAAACCACAAGAGCAACAAGAAGTGCATGTTTTGTCAACAACAAATGGGAATGTTAGTGAGTCAATGTGTGTGCCTGTGGTGCAGTGTAGGGTTGCAAAGTAA 801 0.4332 MGRNPCCDKEQINKGPWSKEEDELLINYINLHGEGNWRSIPKVAGLLRCGKSCRLRWMNYLRPNLKKGDFTKEETDLIIHLHSLLGNKWSQIATSLPGRTDNEIKNYWNTHLKRYLYALGIDPITHKPFKDATNTTTPPTNSQVSMVTTTSKNGTNNNTSSFTTEISPHIYYFNVFLNSKVHISTDDYSADGEDSNSSSGVTIEEAYPQVNLELSIAPPTLQPQDASMNPKWLKPQEQQEVHVLSTTNGNVSESMCVPVVQCRVAK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00605 266 PANTHER F14D16.11-RELATED 1 243 - -
Pumo6g00605 266 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo6g00605 266 SMART sant 66 114 IPR001005 -
Pumo6g00605 266 SMART sant 13 63 IPR001005 -
Pumo6g00605 266 CDD SANT 16 61 IPR001005 -
Pumo6g00605 266 FunFam MYB transcription factor 68 129 - -
Pumo6g00605 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo6g00605 266 CDD SANT 70 112 IPR001005 -
Pumo6g00605 266 MobiDBLite consensus disorder prediction 130 160 - -
Pumo6g00605 266 Gene3D - 69 115 - -
Pumo6g00605 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo6g00605 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo6g00605 266 FunFam MYB-related transcription factor 13 66 - -
Pumo6g00605 266 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo6g00605 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo6g00605 266 Gene3D - 14 66 - -
Pumo6g00605 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00605 Pumo-Chr6 7635608 7638610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00605 1 234 MYB Transcription Factor Family AT4G38620 49.167 3.83e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g00605 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00605 K09422 - gmx:100791004 307.375