Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00601 ATGGCGGCGAAATCCAGTTCGAGTTCGGCAACAAACGTGACTCTGAAGGCGGCGTGGGTTCTCCCGCAGCGGACGCAGAACATCGGGGAGGTGTACGAGATTGGTCGGAAGCTGGGGCAGGGGCAATTCGGGACAACGTTCGAGTGCACGCGCCGCGCGAGTGGGGGGAAGTTCGCGTGCAAGTCCATTCCGAAGCGGAAGCTGCTGTGCAAGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCGGAGCACGCGCACGTGGTCCGCATCGAGGGCACGTACGAGGATTCCTTGGCCGTGCACCTCGTCATGGAGTTGTGTGAGGGCGGAGAGCTCTTCGACAGGATCGTGCAGAAGGGACACTACAGTGAGAGACAGGCGGCAAGGTTGATAAAGACCATTGTTGAGGTTGTTGAGGCGTGTCACTCGCTTGGGGTGATGCATAGGGACCTCAAGCCTGAGAACTTTTTGTTTGATACTGTTGATGAGGATGCCAAGCTTAAGGCCACTGATTTCGGGTTGTCTGTTTTTTACAAGCCCGGTGAATCCTTTTGTGATGTTGTCGGGAGCCCATACTATGTCGCACCAGAGGTCTTGCGCAAGCACTATGGACCTGAATCAGATGTGTGGAGTGCTGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAATCTGAACCGGGGATCTTCCGACAGATTTTACTAGGAAAAATTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTCTTGATTCTGCAGTTTTATCACGTCTGAAACAATTCTCTGCAATGAATAAATTGAAAAAGATGGCATTGCGTGTTATTGCTGAGAGGCTATCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACGTTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCTGATATTGATAAAAGTGGGACAATTGATTATGGTGAATTCATTGCCGCCACTGTTCATTTGAATAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAAGATGGCAGTGGTTACATAACCCTTGATGAGATACAGCAAGCTTGTAAGGACTTTGGTTTAGATGATATCCATATTGATGACATGATCAAGGAAATTGATCAAGATAACGATGGGCAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGCGAACTATGAGAAAAACACTAAATTTAAGAGATGCTCTGGGATTAGTAGACAATGGGTCCAATCAAGTTATTGAAGGCTACTTTAAGTAA 1521 0.4681 MAAKSSSSSATNVTLKAAWVLPQRTQNIGEVYEIGRKLGQGQFGTTFECTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHAHVVRIEGTYEDSLAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAESEPGIFRQILLGKIDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00601 506 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Pumo6g00601 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 464 - -
Pumo6g00601 506 Gene3D - 403 506 - -
Pumo6g00601 506 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00601 506 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Pumo6g00601 506 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Pumo6g00601 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Pumo6g00601 506 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Pumo6g00601 506 FunFam CDPK-related kinase 3 24 192 - -
Pumo6g00601 506 FunFam Calcium-dependent protein kinase 1 34 117 - -
Pumo6g00601 506 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Pumo6g00601 506 SUPERFAMILY EF-hand 329 470 IPR011992 -
Pumo6g00601 506 Pfam Protein kinase domain 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00601 506 CDD STKc_CAMK 31 289 - -
Pumo6g00601 506 ProSiteProfiles Protein kinase domain profile. 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00601 506 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Pumo6g00601 506 FunFam calcium-dependent protein kinase SK5 327 399 - -
Pumo6g00601 506 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Pumo6g00601 506 Gene3D Phosphorylase Kinase; domain 1 34 118 - -
Pumo6g00601 506 CDD EFh 338 397 IPR002048 GO:0005509
Pumo6g00601 506 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Pumo6g00601 506 ProSiteProfiles EF-hand calcium-binding domain profile. 443 474 IPR002048 GO:0005509
Pumo6g00601 506 FunFam Calcium-dependent protein kinase SK5 403 498 - -
Pumo6g00601 506 FunFam Calcium-dependent protein kinase SK5 200 295 - -
Pumo6g00601 506 SMART efh_1 373 401 IPR002048 GO:0005509
Pumo6g00601 506 SMART efh_1 443 471 IPR002048 GO:0005509
Pumo6g00601 506 SMART efh_1 337 365 IPR002048 GO:0005509
Pumo6g00601 506 SMART efh_1 409 437 IPR002048 GO:0005509
Pumo6g00601 506 Gene3D - 331 402 - -
Pumo6g00601 506 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Pumo6g00601 506 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Pumo6g00601 506 Pfam EF-hand domain pair 338 398 IPR002048 GO:0005509
Pumo6g00601 506 Pfam EF-hand domain pair 408 469 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00601 Pumo-Chr6 7562323 7568886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00601 20 498 EF-hand Containing Proteins AT4G09570 77.386 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo6g00601 Pkinase 5.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00601 K13412 - gmx:100806678 1004.2