Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00578 ATGGAAAGAGGCCACTTCCTTTGGAAGAAGAAGCGGAAGAGAAAGCGTTTCCGTTTTATTCTTCTCGGTCCCAGCAAGACACATCGGCTGTTGTATCGGCCCTTATTCAAGTCATTGGTGGCAATCCAGTGCACAAAGATCCAACAACAGCGTCTCAACCCAGCGTTGTTGGGAATGATTCGAATGATCAATCACAACCACCACAACATCAAGTTATCAATTTGGGGAGTAAAGAGAGTAGAGAAGTGGGTTTCGGAGTTGCTGAATGGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCAAAGAAAGCAGCGAGAGTTTGGCTCGGAACCTTTCACACTGCTGAGGCCGCTGCACTCGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCATCTCTCTAAGGAATTCGGTTACCTCACAAATCGTCCACAGTTATTCCACGCCGCCACGTCACGCATTCATGACAATAACGATCAACAACCACGCTCTTCAAGTCCCTTTCAACATGCCCAAGTGTTTCATGGCATTGCAACTAATAACAACTTCAATAATGATGCTATGTCTCGTCTCTATGGGAGTGACGTGTTTGCTTCTTCTCGTCCTTTATCAGCTGTAACTTCGTCTTCATCTTCGCGACCTCCACAACAACAAGAGCTTCTAACGTTTTCGATGCAGTCTGTGGGTTCTTCTGAGCCTCCTAGGAAACGGACAAGTGATTTGGATGGCAAAGACAAACGATGA 795 0.4717 MERGHFLWKKKRKRKRFRFILLGPSKTHRLLYRPLFKSLVAIQCTKIQQQRLNPALLGMIRMINHNHHNIKLSIWGVKRVEKWVSELLNGGVRQRPWGKWAAEIRDPKKAARVWLGTFHTAEAAALAYDEAALRFKGSKAKLNFPERVHLSKEFGYLTNRPQLFHAATSRIHDNNDQQPRSSSPFQHAQVFHGIATNNNFNNDAMSRLYGSDVFASSRPLSAVTSSSSSRPPQQQELLTFSMQSVGSSEPPRKRTSDLDGKDKR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00578 264 MobiDBLite consensus disorder prediction 222 264 - -
Pumo6g00578 264 Gene3D AP2/ERF domain 90 147 IPR036955 GO:0003700|GO:0006355
Pumo6g00578 264 CDD AP2 91 146 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 PANTHER DNA-BINDING DOMAIN 90 225 IPR044808 GO:0003700|GO:0009873
Pumo6g00578 264 SMART rav1_2 91 151 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 Pfam AP2 domain 91 137 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 MobiDBLite consensus disorder prediction 222 251 - -
Pumo6g00578 264 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 SUPERFAMILY DNA-binding domain 91 146 IPR016177 GO:0003677
Pumo6g00578 264 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Pumo6g00578 264 FunFam Ethylene-responsive transcription factor 2 88 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00578 Pumo-Chr6 7338894 7343231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00578 91 163 AP2-EREBP Transcription Factor Family AT5G61890 78.667 7.47e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g00578 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00578 - - gmx:100793410 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00578 6 7338894 7343231 Pumo6g00578 6 7338894 7343231 ECH
Pumo6g00578 6 7338894 7343231 Pumo10g01816 10 23872349 23874904 ECH
Pumo6g00578 6 7338894 7343231 Pumo5g02108 5 57582173 57583853 ECH
Pumo6g00578 6 7338894 7343231 Pumo10g01816 10 23872349 23874904 PCT