Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00575 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCTGCTTCATCCCACTTTTTTGATGACATTTCCTTTCCTTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGACCATTATCCACAAGGAAACAATGGAATGGTAGCATCATCTGGCAGCATGTTGAACGCTACACCACCCCTTGATGTAAATGTAAAAGCTGGCTTACTGATGCCGCAGGCTAGTCTACCTGGGGATATTATAGATTCCAAGGAATCATCGAATTATCGTCCCAAATCATTGTCTGATGCATGTCTGCTGTCAGCACCTACCTCATATGGTTTAATTGGGAACAAGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTATCCAGGAATGATGTTCTGTCTGATCATCTCATAACTGCTGGTTCTCCTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAATGGTCTCGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATACGGAGATATCCGAACCATTTATGCAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCATATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCACCCGTTTTAAATGACGAGCTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGACATGAACAATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAAGCTGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTTGAGACATGTTTGATGCATCAGTCTCAAAAAGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAGGCAACAGTGCCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAGTCAGAAATTTCAATCTACAGTTCGGCAACCTTTGAATGCATTTATGGATAATTCATTCATTCATGTGAATTCTGGCATTCACAACACTGTGAGAGGGGCACCTGCTGGAAAAGTGTCCAGTGTTTGTGAGTCAAGTAGCTTTGTTGATGCAATGAAATTTGCATCTGGTTCAAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCTGGAGGAAATGGGATACGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTACAGCAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCGAGCCATCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGAAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCATGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATATGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACATCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTACCAATGAACGAATGAGAAACCTTTATCATCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAAAAACAATATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACTTATGATTTTCTCTATTTACCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAATCTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCATACCGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCCTGGAAAATCTCGCACTGCTGGCAACGAGGAGAATCGAAGCCAAGGAAGTCCTTCAACTTTGGCAAGTGGAGAAGAGTCTGCTAA 2835 0.4099 MPFQIMDQRGVSASSHFFDDISFPSERNVGLRKPKSINDHYPQGNNGMVASSGSMLNATPPLDVNVKAGLLMPQASLPGDIIDSKESSNYRPKSLSDACLLSAPTSYGLIGNKIVTNAAPCESSLFSSSMSEIFSQKLRLSRNDVLSDHLITAGSPPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRMNGLDGDYGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYAACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLNDELKQIFGFYGEIKEIYEYPDMNNHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPRFETCLMHQSQKGQEERDLGQSIIDNLSLRQKATVPSGVIGSGCLENGYSQKFQSTVRQPLNAFMDNSFIHVNSGIHNTVRGAPAGKVSSVCESSSFVDAMKFASGSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQPSSSTMLWQKSPSFVNDACSPSHPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTASPWERKNSYLGGSPEASGFRMGSLGSGGFHGSWQLHPLDFPSHNMFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDATNERMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKSSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPWKISHCWQRGESKPRKSFNFGKWRRVC 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00575 944 CDD RRM1_MEI2_like 253 328 IPR034453 -
Pumo6g00575 944 SMART rrm1_1 255 323 IPR000504 GO:0003723
Pumo6g00575 944 SMART rrm1_1 340 408 IPR000504 GO:0003723
Pumo6g00575 944 SMART rrm1_1 784 860 IPR000504 GO:0003723
Pumo6g00575 944 FunFam MEI2-like protein 5 isoform 2 243 337 - -
Pumo6g00575 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 904 - -
Pumo6g00575 944 SUPERFAMILY RNA-binding domain, RBD 251 411 IPR035979 GO:0003676
Pumo6g00575 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Pumo6g00575 944 CDD RRM3_MEI2_like 785 870 IPR034454 -
Pumo6g00575 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Pumo6g00575 944 Gene3D - 338 431 IPR012677 -
Pumo6g00575 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Pumo6g00575 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Pumo6g00575 944 SUPERFAMILY RNA-binding domain, RBD 784 868 IPR035979 GO:0003676
Pumo6g00575 944 Gene3D - 248 337 IPR012677 -
Pumo6g00575 944 FunFam Protein MEI2-like 1 338 432 - -
Pumo6g00575 944 Pfam RNA recognition motif 2 782 878 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00575 Pumo-Chr6 7302321 7308637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00575 252 405 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 5.48e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00575 - - gmx:100797893 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00575 6 7302321 7308637 Pumo10g01823 10 23956238 23963347 PCT