Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00570 ATGCAGCTCCAGTGTTTGGAGGAAAGTGCTGAATCGTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGTCTTGGAGAGGCATATGATGGGGACATCGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCATTGAGAGAAATCAGTACGTACAAGGAACTACTCCGGTCACAAGTAGAGCACATTTTCAATGACCGGTTACTACCCATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGAAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAATTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATGACATTGAGGTCAAAAAGAGATTTGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCAACTGTTACATCAAATGGAACCTTTCATTAGTGAGATTATGGATTATGTACATCAGTCAAGAGAAAGTTACAATCAGGAGCAGATTTCACTTTATAAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCCTATGGTTCTCCTAGTGGAGACTCTGCACAACCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTAATGGAATCCGCTGCAAATGGAAAGATTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCGGGTCACATGGCAGCAATCAACCATCTCCAAAGAGGAATACTGGCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTTGCACGTCATACCGTAAACCTGCTGACATCAACAATCAAGCTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCTTTGTTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCGACTCTCACTCTGATGACAATATTGATAAGTCAGAAAGTTCTCCAGATGATGATCACCCCACGACTGTGAAGTCTGCATCCAAGAATTCCACTCCTAATAACCAGTTACGTGCATCTAGAAGTTTGCAGTTGCATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTTGATGTTAAAGTCTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTAGGCAATCTTTTTGCAAACTCGGTTTGGGAGGAGCTGCTGCATTCACCGAGTAATTTGCAAACTGTGGACACCCCTGCTAGTTCGTCCAAGGAAAATCGAGAGGGGCTCTTTCATGCCAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAAAACCACCCTTTCCTCTCACTGGGACAACTGGTGCAGGAAAGCATCTGTGCCAATGATAAGAAAGCAGTGTACCAGCATATTGTCAAGTCGGATGTTGCCGTCAATGCCATCGGTTGGCAAGCATCGTCTGATGACTCTTTCAACATGGCTTCTTCAAATAATTTAGACATTGCATCTCAAAGTGAAAATCAGCGCATTGAGGACATACAAGATGGTTCTAGCATGCTTCACCTGGCATGCCTAACTAGTGACGTTGGCATGGTGGAGCTGCTCCTACAACATGGGGCAGATATAAATGCTTGTGATTCTAGAGGTCGGACACCACTACATTATTGTATTATTAAAGGGAAGACGGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTCGCAGATAAAGAAGGCAACACTCCTGTTAAGCTTGCATCAGAGCCTGGCTGTGTTGACAATGAAGTTCTCGCTCTCTTGTTACAGAAGAGAAATGTGAGGGACGACGTTCTATAA 2400 0.4233 MQLQCLEESAESLRARCCKFYKGCRKYTEGLGEAYDGDIAFASAIENFGGGHNDPHFVALGGPVMAKFTIALREISTYKELLRSQVEHIFNDRLLPIVNVDINEVKEARKRFDKASLVYDQAREKFMSLRKSTKIDIATVIEEELQDARASFEEARFNLVGTLNDIEVKKRFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFISEIMDYVHQSRESYNQEQISLYKRMQDYKKQVYEESRLSLNGPYGSPSGDSAQPFSRISNEVADVVMESAANGKIQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSGSHGSNQPSPKRNTGTENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKLDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSHSDDNIDKSESSPDDDHPTTVKSASKNSTPNNQLRASRSLQLHKHSMRIEKPIDVLRKVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMLKSLGNLFANSVWEELLHSPSNLQTVDTPASSSKENREGLFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKNHPFLSLGQLVQESICANDKKAVYQHIVKSDVAVNAIGWQASSDDSFNMASSNNLDIASQSENQRIEDIQDGSSMLHLACLTSDVGMVELLLQHGADINACDSRGRTPLHYCIIKGKTAAAKVLIMRGANTYVADKEGNTPVKLASEPGCVDNEVLALLLQKRNVRDDVL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00570 799 ProSiteProfiles Ankyrin repeat profile. 733 765 IPR002110 GO:0005515
Pumo6g00570 799 SMART 5bar 2 205 IPR004148 GO:0005515|GO:0005737
Pumo6g00570 799 SMART arf_gap_3 486 631 IPR001164 GO:0005096
Pumo6g00570 799 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Pumo6g00570 799 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Pumo6g00570 799 PRINTS HIV Rev interacting protein signature 540 561 IPR001164 GO:0005096
Pumo6g00570 799 SUPERFAMILY Ankyrin repeat 676 791 IPR036770 -
Pumo6g00570 799 ProSiteProfiles PH domain profile. 279 415 IPR001849 -
Pumo6g00570 799 SUPERFAMILY PH domain-like 190 415 - -
Pumo6g00570 799 CDD PH_ACAP 282 419 - -
Pumo6g00570 799 ProSiteProfiles Ankyrin repeat region circular profile. 700 731 - -
Pumo6g00570 799 SUPERFAMILY BAR/IMD domain-like 2 302 IPR027267 -
Pumo6g00570 799 ProSiteProfiles BAR domain profile. 1 223 IPR004148 GO:0005515|GO:0005737
Pumo6g00570 799 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
Pumo6g00570 799 MobiDBLite consensus disorder prediction 428 471 - -
Pumo6g00570 799 CDD ArfGap 489 618 - -
Pumo6g00570 799 SMART ANK_2a 700 729 IPR002110 GO:0005515
Pumo6g00570 799 SMART ANK_2a 733 762 IPR002110 GO:0005515
Pumo6g00570 799 SMART ANK_2a 766 797 IPR002110 GO:0005515
Pumo6g00570 799 MobiDBLite consensus disorder prediction 318 337 - -
Pumo6g00570 799 SMART PH_update 280 417 IPR001849 -
Pumo6g00570 799 Coils Coil 105 125 - -
Pumo6g00570 799 Gene3D Arfaptin homology (AH) domain/BAR domain 1 237 IPR027267 -
Pumo6g00570 799 Gene3D Arf GTPase activating protein 466 632 IPR038508 -
Pumo6g00570 799 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 631 IPR001164 GO:0005096
Pumo6g00570 799 PANTHER CENTAURIN/ARF 2 790 IPR045258 GO:0005096
Pumo6g00570 799 MobiDBLite consensus disorder prediction 433 457 - -
Pumo6g00570 799 Pfam PH domain 281 414 IPR001849 -
Pumo6g00570 799 Gene3D - 670 797 IPR036770 -
Pumo6g00570 799 Pfam Ankyrin repeats (many copies) 704 754 IPR002110 GO:0005515
Pumo6g00570 799 Pfam BAR domain of APPL family 2 220 IPR004148 GO:0005515|GO:0005737
Pumo6g00570 799 CDD BAR_SFC_plant 2 202 IPR035670 -
Pumo6g00570 799 Gene3D - 272 423 IPR011993 -
Pumo6g00570 799 ProSiteProfiles Ankyrin repeat region circular profile. 733 765 - -
Pumo6g00570 799 SUPERFAMILY ArfGap/RecO-like zinc finger 485 625 IPR037278 -
Pumo6g00570 799 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 468 631 - -
Pumo6g00570 799 Pfam Putative GTPase activating protein for Arf 489 624 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00570 Pumo-Chr6 7207166 7219043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00570 496 624 C2H2 Transcription Factor Family AT4G21160 43.077 1.04e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00570 K12489 - gmx:100792517 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00570 6 7207166 7219043 Pumo6g00570 6 7207166 7219043 ECH
Pumo6g00570 6 7207166 7219043 Pumo10g01827 10 24048537 24056286 PCT