Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00569 ATGGCGACGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGAAAAGGAGACAACAGTTCTGGTGGCTACAACAACGGGAACGGTGGAGGCGAGGCTCAGAATGCTTCTTCGTCATCATCCGCGAGAGACGCTGAAGCTGCGCTTTACCGGGAGCTGTGGCACGCGTGTGCGGGTCCTCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTATTTTCCTCAAGGGCATATCGAGCAGGTGGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCATCCAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTGACTTTACTTCCTGAGCCAAATCAAGATGAGAATGAGGTGGAGAAAGAGGGTCCTCCGGCTCCTCCTCCTCGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCGTCTGATACGAGTACTCACGGTGGGTTTTCGGTGTTGAGACGACATGCCGATGAATGCCTCCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTAGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGACAGCAGGGTAATGTTCCATCATCAGTTATCTCGAGCCACAGCATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGGACCATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCAGCTGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTCAAAAACAATTATACCATTGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCTGAGCAAAGGTTTACTGGCACCATTGTTGGAATTGAAGATGCTGATCCCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCAAACATACCTCGTCCTGAGAGAGTTTCCCAATGGAACATAGAGCCTGCTCTTGCACCTCCTGCTATAAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCTGTTCTTACTCGTGAAGCTTCATCTAAAGTAAGCGTAGATCCTTTGCCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTAATGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACGGCAGAGAAGTCTGTTGTGTGGCCACCTGCTGCAGATGATGAAAAGATTGATGTTTCTACCTCAAGAAGGTACGGGCCAGACAGCTGGATGTCAATGGGAAGGCACGAACCAACATATCCAGATCTACTTTCAGGCTTTGGGGTCCATGGAGATCAATCATCCCATCCATCCTTTGTTGATCAAAATGGTCCTGTAGCTAACCTTAGCAGAAAACATTTGTTGGATCGCGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGGAGTGCCATCTAGCCTTTCACTCAATCTCTTGGACTCTAATACAAAAGGCTCTGCTCAAGGTGGTGATACAACTTACAAAGTTCGAGGGAATTTGAGGTATAGTAGTGCATTTGGTGAGTACCCTGTGCTTCATGGACATAAAGTTGAGCATTCACATGGAAACTTTCTGATGCCACCACCACCATCAACTCAATATGAGAGTCCTCGTTCAAGAGACCTGCTGCCCAAACCAATACCAGGAAAACCTTGTGATGTTTCAAAACCGAAAGACAGTGACTGTAAGCTATTTGGCATCTCACTCCTTAGTGGCCCCATTGCACCAGAGCCTTCTGTATCACAAAGAAATGTTGCAAGCGAGCCAGTTGGTCACATGCATACAACATCACACCAACAACGTACATTTGAAAACGATCAGAAGTCCGAGCATTCAAGGGGATCAAAACCAGCTGATGGTCTGCTGATTGATGACCATGAAAAGCTGTTACAAACTTCTCAGCCACATATGAAAGATGTTCAACCCAAATCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCAGTGGACCTCACAAAATTCAGTGATTATGGTGAATTAATTGCTGAATTAGATCAACTATTTGAATTTGGAGGTGAATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCATGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCAGCTAGTGAAGGTGCAGCAGACGGACAAGAAATCAAGTGTCAGCTCAACCATTCAGCTTCAGATACCTAA 2559 0.4662 MATSEVSIKGNSVNGKGDNSSGGYNNGNGGGEAQNASSSSSARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPSKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENEVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRSLKVRWDETSNIPRPERVSQWNIEPALAPPAINPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPTSGFQRVLQGQELMTLRGNFAESNESDTAEKSVVWPPAADDEKIDVSTSRRYGPDSWMSMGRHEPTYPDLLSGFGVHGDQSSHPSFVDQNGPVANLSRKHLLDREGKHNVLSPWPGVPSSLSLNLLDSNTKGSAQGGDTTYKVRGNLRYSSAFGEYPVLHGHKVEHSHGNFLMPPPPSTQYESPRSRDLLPKPIPGKPCDVSKPKDSDCKLFGISLLSGPIAPEPSVSQRNVASEPVGHMHTTSHQQRTFENDQKSEHSRGSKPADGLLIDDHEKLLQTSQPHMKDVQPKSHSGSARSCTKVHKKGIALGRSVDLTKFSDYGELIAELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGAADGQEIKCQLNHSASDT 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00569 852 ProSiteProfiles PB1 domain profile. 728 810 IPR000270 GO:0005515
Pumo6g00569 852 MobiDBLite consensus disorder prediction 389 405 - -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 598 617 - -
Pumo6g00569 852 Pfam AUX/IAA family 774 816 IPR033389 -
Pumo6g00569 852 Gene3D - 318 388 - -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 389 429 - -
Pumo6g00569 852 SUPERFAMILY DNA-binding pseudobarrel domain 151 284 IPR015300 -
Pumo6g00569 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g00569 852 Gene3D - 152 257 IPR015300 -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 816 852 - -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 407 429 - -
Pumo6g00569 852 SMART B3_2 155 257 IPR003340 GO:0003677
Pumo6g00569 852 MobiDBLite consensus disorder prediction 677 698 - -
Pumo6g00569 852 FunFam Auxin response factor 318 390 - -
Pumo6g00569 852 SUPERFAMILY CAD & PB1 domains 730 805 - -
Pumo6g00569 852 CDD B3_DNA 153 255 IPR003340 GO:0003677
Pumo6g00569 852 Pfam Auxin response factor 281 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo6g00569 852 MobiDBLite consensus disorder prediction 653 676 - -
Pumo6g00569 852 FunFam Auxin response factor 153 257 - -
Pumo6g00569 852 Gene3D - 724 817 - -
Pumo6g00569 852 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Pumo6g00569 852 FunFam Auxin response factor 723 817 - -
Pumo6g00569 852 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Pumo6g00569 852 MobiDBLite consensus disorder prediction 651 698 - -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 816 835 - -
Pumo6g00569 852 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00569 Pumo-Chr6 7166413 7171331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00569 1 850 B3 DNA Binding Superfamily AT5G62000 64.269 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo6g00569 AUX_IAA 1.1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00569 - - gmx:100815956 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00569 6 7166413 7171331 Pumo10g01830 10 24097298 24102176 PCT