Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00568 ATGGAAGAGAGTGCAGCAAAGAACGGTGGAAACAGCTCGAATAATGCCAATAGCACCATCACCGGCGGCGTGGATCAGAAAGGCAAGAAGAAGACGGGAATACCAGCTAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTACATGCTGAGATCCGTTGTTCCCAATATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATAGAGTATTTGAAGGAACTACTGCAAAGGATCAGTGACCTTCACAATGAATTGGAGTCAACACCAGCTGGCTCTTCATTGACACCTGCTTCAAGCTTTCTTCATCCTCTGACACCCACTCTTCCAACACTGCCAGCCCGTATGCAAGAAGAACTTTGTCTCGGCTCGTTGCCAAGCCCTAATGGCCAACCTGCAAGGGTTGAGGTTGGGTTGCGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGACCGCAAACCTGGTCTCTTGCTTTCTACCATGACGGCTCTCGACAACCTTGGGTTAGACATTCACCAGGCAGTAATCAGCTATTTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGCTACGCAACGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTTTTGTTGGATTCAGCTGGCTTCCATAGCATGACCTAA 678 0.4794 MEESAAKNGGNSSNNANSTITGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISDLHNELESTPAGSSLTPASSFLHPLTPTLPTLPARMQEELCLGSLPSPNGQPARVEVGLREGRGVNIHMFCDRKPGLLLSTMTALDNLGLDIHQAVISYFNGFAMDIFRAELRNEGQDVHPEQIKAVLLDSAGFHSMT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00568 225 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 222 - -
Pumo6g00568 225 SUPERFAMILY ACT-like 152 224 IPR045865 -
Pumo6g00568 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Pumo6g00568 225 FunFam BHLH transcription factor 28 97 - -
Pumo6g00568 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 102 IPR036638 GO:0046983
Pumo6g00568 225 SMART finulus 39 88 IPR011598 GO:0046983
Pumo6g00568 225 Pfam Helix-loop-helix DNA-binding domain 40 82 IPR011598 GO:0046983
Pumo6g00568 225 Gene3D - 25 97 IPR036638 GO:0046983
Pumo6g00568 225 CDD bHLH_AtAMS_like 36 101 - -
Pumo6g00568 225 MobiDBLite consensus disorder prediction 1 25 - -
Pumo6g00568 225 CDD ACT_UUR-ACR-like 154 214 - -
Pumo6g00568 225 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00568 Pumo-Chr6 7161999 7166061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00568 34 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 80.723 2.94e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g00568 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00568 - - gmx:100217341 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00568 6 7161999 7166061 Pumo10g01831 10 24102407 24106392 PCT