Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00565 ATGCCTTCTAGCTCTTGCATCATAGAATCGTTGGAGAAGTCAAAATTGGACCTGCATCCTGATCAGACAGAAATTAGCTTGTGGGAGAGGCTTGGGAATGCTGCAATGTTGGACGTTGAATCGGGCTCCTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACAGCAGTAGCAACGAACATTCCGAGGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATATTCCTGGGAATGCTGATGCTTTTCCAAAAGAAGCAGCAGCTGTTATAAAGATATCATCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTATGAATTTGCCAAGTGGATGGGAGTCCAAACTCCACAGGGTAGAGTCATTCACAATACCAGTTTAGAATGGCAACAAATAAAGGAAGCTGCAGAAAAAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGATATTGGTGAAGTGACATGTTTTGAACTTTTAGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGTTATGTACATGGTTCACCCTTGCTTGAAAACTCTAGTGCATTCGAGTCAAGGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTACTGATGGTGGACCTTGTCATCAGAAACGAAGATAGACTGCCTTGCCGTGAGCTTAGATGGCGAGGAAATCCTGCAAATTTGTTGTTGGCTGGAAAGAATATATGTGCAAATACAGATGCACTAGAAGCAGCTTTTGATTCTGCAGTTAACCGATATAGACCGAAGGTGATTAGGGCATTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCAATTCTCATAATCCTGGCTTGATATCACAATCTTCTGATCTCTCGGACATCATAGAATCACCAAGATCTGCTGACACGATCCTTCAAACATCGGGAGAATCATTGTCTCCTGACTTTAACATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCTCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTATCCTAAGTTGGTTGAGTTGCTAGTCACTAGTTCTGAATTTGCCTCAAACCTGTTATATGATATAACTGGCGGGAAATTAGGATGTCCCCCACCAGAAGACATGGAAAAAACTGATGTACATATAAGTGGCACAAAGTTTGTAGTTCATGCATTCCGTAATGGTTTCCGTGCTGCTCTTAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATTATAAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATTCTGTGGTTCCTGACTCACCTTCGCTGACTGCTGGCGGGAGTTATTCCTCTCCAACATGTAAGGAAAGGCTGGCTAATGATAACCATCAAGATTTCATTGAGTCAGAATCACAGAGAACTGCTTCAAGAGCATCATCTTCAGGCAATAGAGATTGCGGTGACTCTACTCCTATGTCAAGAGAAACTTGGCATGGAAAGTTCTATAGAGGAAATGGGGAACCACTTCGTAGTCTCCGTTTGACTGCTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAATAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAGTGATGCCATCAAACTATGCCAGGAGAACAATTTCAACCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGTCGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATTCTTGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGGAGTGACAAGTAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACACTGCAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTACAAGAATTTCTCCGTATGTGACAGTTATGATTATAACATCAGCAGCATATTTGAAGAAGCGTGTGATTTTATAGACCATGTTGAACAAACAGGTCAAAAAGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAAGAAGTATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTGTTAGAATTGGATCTGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGGAAACCAGTGATGAAAGTCTGCCCCATATGTGGGAAGAATGCTGGACTAAGCAGCAGCTCACTCAAACTACATCTGCAGAAATCACATAGAAAGCTATCATCTGGGAGTGTAGATAGTGCCATGACTATGGAAATCCAGAAAGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTCAGCCCCACACAAAGATCATCTCATCCACTAATAGATCAATAG 2526 0.4184 MPSSSCIIESLEKSKLDLHPDQTEISLWERLGNAAMLDVESGSFSWDMLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNIPGNADAFPKEAAAVIKISSSRMATQSERLGYEFAKWMGVQTPQGRVIHNTSLEWQQIKEAAEKAREAANSEGDDIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESRESAERTSEALGRVLMVDLVIRNEDRLPCRELRWRGNPANLLLAGKNICANTDALEAAFDSAVNRYRPKVIRAFQKERRSTSVDCRLNSHNPGLISQSSDLSDIIESPRSADTILQTSGESLSPDFNIVAIDSGVPRRPPAGKRANDQVNYPKLVELLVTSSEFASNLLYDITGGKLGCPPPEDMEKTDVHISGTKFVVHAFRNGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIISKISLGEFDKEDSVVPDSPSLTAGGSYSSPTCKERLANDNHQDFIESESQRTASRASSSGNRDCGDSTPMSRETWHGKFYRGNGEPLRSLRLTAKLRDFHKFAKVDAESNKELEQWNEMLKSDAIKLCQENNFNPGFFEGSDNNCVVDAYELKVRLEHILERIALISDAASTEKPSGVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSYDYNISSIFEEACDFIDHVEQTGQKVLVHCFEGRSRSVTLVLAYLMLRKKYTLSEAWQALKRVHRRAQPNDGFAKILLELDLKLHGKVSMEWHQRKPVMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHPLIDQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00565 841 SMART dsp_5 614 756 IPR020422 GO:0006470|GO:0008138
Pumo6g00565 841 Pfam Dual specificity phosphatase, catalytic domain 635 753 IPR000340 GO:0008138|GO:0016311
Pumo6g00565 841 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 683 735 IPR000387 GO:0016311|GO:0016791
Pumo6g00565 841 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 18 839 IPR035010 GO:0004721|GO:0009737|GO:0043622
Pumo6g00565 841 SUPERFAMILY Protein kinase-like (PK-like) 20 350 IPR011009 -
Pumo6g00565 841 ProSiteProfiles Dual specificity protein phosphatase domain profile. 614 759 IPR020422 GO:0006470|GO:0008138
Pumo6g00565 841 CDD DSP 615 752 - -
Pumo6g00565 841 FunFam Dual specificity protein phosphatase PHS1 586 760 - -
Pumo6g00565 841 Gene3D - 193 337 IPR036940 -
Pumo6g00565 841 MobiDBLite consensus disorder prediction 489 508 - -
Pumo6g00565 841 MobiDBLite consensus disorder prediction 450 471 - -
Pumo6g00565 841 Gene3D Protein tyrosine phosphatase superfamily 597 769 IPR029021 -
Pumo6g00565 841 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 615 759 IPR029021 -
Pumo6g00565 841 MobiDBLite consensus disorder prediction 486 510 - -
Pumo6g00565 841 Pfam Actin-fragmin kinase, catalytic 24 310 IPR015275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00565 Pumo-Chr6 7130607 7139105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00565 23 837 Protein tyrosine phosphatase (PTP) family AT5G23720 66.264 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00565 K14165 - gmx:100791993 1516.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00565 6 7130607 7139105 Pumo6g00565 6 7130607 7139105 ECH