Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00560 ATGGCAGCTTTTTCATCCAAATACTACCAGCCCTTTCTGGTTGACTCAATTACTCCTCCTACTCCTCCCATTAAGAACAACGTGTCCTCTTTGGGGGAGCAATCCCTTATAAACTCTACTAATACCCTTCATCATCCTCATCATTTTCACAATAATAATATTATTCATCAGGAAACTTCTTATAGTGTCACTAATCAGGAAACTAGCTGTGTTGATCAAAGCTCCAAGGTTACCATCAGTGACACTGAGCCTTCTGTGGTCAAAAACCACAGCCCTGAGACATCCATGGTGGTGGACAAGCTTGAAAAGGGTGAACAAGTCACTCAGAAGGTCACTCCTATGGAGAAGAAGAGAAGACCAAGAAATGGATCTTCCTTGAGTAACCCTTTATCAAAGGAGTCAACAGAAGAGGGAAATAAGAAACAAAAGAAGAGCAATGGTGGGGTGAAAGGAGAAAACAAGGCAAAAGAAGTGAAAAAGGATCAGAAAAAAGGTCCTGAAGATCCTCCAACCGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACCCTCATGTTGTCTCAAATAAGTCTAATGATGAAACTTTGTCCCACTGAATTTCAGAAATTGAATAATATAGCATCACCATCACCATCAGCGCTACCATGTGTAGCACAATTCAGACCCAACCAGCAGGCCATTGATTTTGCTGACACAACCACCCTGACCACCACTACCAGCAGCTTCCCCACAGCTAATAATGATGATTATCTTTTGGATTATTCATCCTCACTTTTTCTTCAAGGCCAGTGGCCAAATCTCTTCTTTGAGTATAACGGTGGTCAGTTTTGGGACGTAGAAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCGGCAATAATTCGGGTTGGGAAATTCCAAGCAAGTACCAGTATCTCAGTGGAAAAGAAATTCTTATGCATGAGCACGAAAAACCAAAGCTATGGTTGTTATTTGGGCCGTTTGATTTTCCGGCAATAGACAGATCCTAG 1242 0.4235 MAAFSSKYYQPFLVDSITPPTPPIKNNVSSLGEQSLINSTNTLHHPHHFHNNNIIHQETSYSVTNQETSCVDQSSKVTISDTEPSVVKNHSPETSMVVDKLEKGEQVTQKVTPMEKKRRPRNGSSLSNPLSKESTEEGNKKQKKSNGGVKGENKAKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLMLSQISLMMKLCPTEFQKLNNIASPSPSALPCVAQFRPNQQAIDFADTTTLTTTTSSFPTANNDDYLLDYSSSLFLQGQWPNLFFEYNGGQFWDVEDQRQKFLHPYGFGNNSGWEIPSKYQYLSGKEILMHEHEKPKLWLLFGPFDFPAIDRS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00560 413 FunFam Basic helix-loop-helix transcription factor 179 251 - -
Pumo6g00560 413 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 294 IPR024097 GO:0006355
Pumo6g00560 413 MobiDBLite consensus disorder prediction 74 92 - -
Pumo6g00560 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 249 IPR036638 GO:0046983
Pumo6g00560 413 SMART finulus 188 238 IPR011598 GO:0046983
Pumo6g00560 413 CDD bHLH_AtBPE_like 172 248 - -
Pumo6g00560 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 232 IPR011598 GO:0046983
Pumo6g00560 413 MobiDBLite consensus disorder prediction 74 190 - -
Pumo6g00560 413 Gene3D - 179 250 IPR036638 GO:0046983
Pumo6g00560 413 MobiDBLite consensus disorder prediction 95 122 - -
Pumo6g00560 413 MobiDBLite consensus disorder prediction 134 190 - -
Pumo6g00560 413 Pfam Helix-loop-helix DNA-binding domain 186 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00560 Pumo-Chr6 7070565 7073938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00560 140 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 68.293 2.63e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g00560 HLH 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00560 - - pvu:PHAVU_002G283100g 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00560 6 7070565 7073938 Pumo6g00560 6 7070565 7073938 ECH