Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00558 ATGGATGATGGCCGCCAACATGAAAACGGCAGGCATAAGATGGAATACTACAGAGGAGCACATTCCTTGTGGAATACTGATTCCCAGCATCAAGTAAAAGAACCAAATGCACTAGTTATGAATAAGAAGATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTTTAGAAATTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGACAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTTTTGGAACGGGATAATGCCCTCGCAGCTCTTCAAAGTCGGAACAATTCTGTCAACTACCCATTTGGCGGTGGAATTCAAGGTGGATCAAAACGGATGCACCATTCTTCAAACCATCTATCTAACATGACTGAAGCTCCATACAGCACAAAGGATATGATAATAAGAGATGCCTCCCCAGTGACTGTTATACCTTCTGAAGCTGTCAAATCTCATCAAGCAAAGAGAACAAAGGAGAACAAGGTAATTAATTCTAAGACATCAAAGCCACCCTGCAAAGTAAAGAAAATGGGTGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAGATCCGAATGGGATAGGCAGGATGTTGGCCTGAATTTGGTTGCATTTGATGAAACTATCATGCCGGTCCCAGTTTGCACATGTACCGGTGTACCACGACAGTGCTACAAATGGGGGAATGGCGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGTATCCGCTACCACAGCTTCCGAACAAGCGCCATGCCCGCATTGGAGGACGAAAGATGAGCGGAAGTGTCTTCACAAGACTTCTCAGTAGGTTGGTGTCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGAATACTGGGCCAGACATGGAACAAATCGCTACATCACTATCAAGTAA 954 0.4455 MDDGRQHENGRHKMEYYRGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILEIELEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDNALAALQSRNNSVNYPFGGGIQGGSKRMHHSSNHLSNMTEAPYSTKDMIIRDASPVTVIPSEAVKSHQAKRTKENKVINSKTSKPPCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00558 317 SMART GAGA_bind_2 1 317 IPR010409 -
Pumo6g00558 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Pumo6g00558 317 MobiDBLite consensus disorder prediction 160 183 - -
Pumo6g00558 317 Coils Coil 53 73 - -
Pumo6g00558 317 PANTHER - 1 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00558 Pumo-Chr6 7030647 7035400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00558 1 317 BBR or BPC Transcription factor family AT2G21240 57.321 2.38e-126 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pumo6g00558 GAGA_bind 7.1e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00558 - - gmx:100813103 609.757