Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00557 ATGGGTTGCGCGCTCGGAAAGCCGGCGGACGCCGGTCACCGTCGCCGGCAAAACACCGCGACTGCCAGCGGCGGCAATAATGCCGCTAAGGTTCGGGAAAAGCAGAAGACTCCGCACGCCGGCGAACTTCCCAGCGTTATTCCGGCGCCGGAGCGCCGGAGACCTCGACTCGAGTCGTTCACGGCGAGCCACCAGGGGTGGCCGCCGTGGCTAATGGCAGTCGCCGGCGACGCTATCGGAGATTGGACTCCTCGCCGTGCCAACACGTTCGAAAAACTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTGTAACTGGGAAGATAGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGGCAGAGACTGTGAAGTTCATGGCTAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGGTTGGTTACTTCAAGAATCTCATCGAGTCTTTACTTGGTATTTGAGTACATGGAGCATGATCTTGCTGGTCTTTCAGCTGGTTTAGGTGTCAAATTCTCTGAGCCACAGGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAAGGTTCCAATCTGCTTATTGACAATGAAGGAATACTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGATCCTAAGCAAAAGCATCCAATGACTAGTAGAGTCGTGACCCTTTGGTACCGTCCCCCTGAGCTTCTTCTGGGGTCTACGTCTTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATTTTGGCAGAGCTACTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAACCATATAAAAGAAACATCTTAGAAACGTTCAAGGATTTTCCATCTTCTTCATTACCTCTGATTGAAACTCTTTTTGCAATAGATCCTGATGATCGTGGCACTACCTCAGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGTGAACCATCTAGTTTACCAAAGTATCCTCCCACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGTTCTATTATTCAGTTATTGCCTTTGATAACTTCTAG 1254 0.4681 MGCALGKPADAGHRRRQNTATASGGNNAAKVREKQKTPHAGELPSVIPAPERRRPRLESFTASHQGWPPWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAETVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLSAGLGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPKQKHPMTSRVVTLWYRPPELLLGSTSYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRNILETFKDFPSSSLPLIETLFAIDPDDRGTTSAALNSEFFTTEPYACEPSSLPKYPPTKELDIKLRDEEARRFYYSVIAFDNF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00557 417 FunFam probable serine/threonine-protein kinase At1g54610 77 172 - -
Pumo6g00557 417 CDD STKc_CDK9_like 90 374 - -
Pumo6g00557 417 FunFam probable serine/threonine-protein kinase At1g54610 173 412 - -
Pumo6g00557 417 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00557 417 MobiDBLite consensus disorder prediction 1 59 - -
Pumo6g00557 417 Gene3D Transferase(Phosphotransferase) domain 1 173 412 - -
Pumo6g00557 417 MobiDBLite consensus disorder prediction 16 30 - -
Pumo6g00557 417 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Pumo6g00557 417 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00557 417 PANTHER CELL DIVISION PROTEIN KINASE 88 378 - -
Pumo6g00557 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Pumo6g00557 417 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Pumo6g00557 417 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00557 417 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00557 Pumo-Chr6 7023125 7027937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00557 82 406 Core Cell Cycle Gene Families AT5G10270 49.853 3.48e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo6g00557 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00557 K08819 - gmx:100789359 778.089