Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00554 ATGGAAAAGCTTAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAGCTTGTTTTTCAATACTTGAAATGTAAGGTCTTCTCCTACCCCTTGCCTGCTTCGATCATTCCTGAGATCAATGTCTGCAAGTATGATCCTTGGGATTTGCCAGGGAATTGTGATCCGCAAGAGAGGCACTTTTTCAGCCCGAAGGAAGCAAAGTATCGAAATGGTAATCGCATGAACCGAACAACAAAGTGTGGCTATTGGAAGGCAACAGGATCGGACAAAAGAATATCATCTTCAACGTGTAATGGTATTGTGGGGATAAGAAAAACTTTGATTTTTTATGAAGGCAAATCTCCAAAAGGGTCCAGAACTGATTGGGTCCTGCACGAATATCGTCTCGTCAGTGTTGAAACAGAAACTGGTGCTAATTGCAACTCATCCCATAACTACGTAAACGAGATAGGAGATTGGGTTCTGTGTCGCTTATCGATGAAGAAAAGAAGCATAGAAAGTGATGGCAGCGGCACTCATCACAGGCATAGGCAAAATACAGTTGAAACTCGTCCAAGATTAATGTTTGATTTTATGATGGTAGGCAAGACCAATTCTTCTACATCCTCATCATGTTCAAGTTCCAGTAACATCATGGAGGTTTCTTCAAATGCATCGGATCATGAAGAAACAAGTGGCTATGCCCATTTTTAG 723 0.4108 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKYDPWDLPGNCDPQERHFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSTCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLVSVETETGANCNSSHNYVNEIGDWVLCRLSMKKRSIESDGSGTHHRHRQNTVETRPRLMFDFMMVGKTNSSTSSSCSSSSNIMEVSSNASDHEETSGYAHF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00554 240 ProSiteProfiles NAC domain profile. 14 171 IPR003441 GO:0003677|GO:0006355
Pumo6g00554 240 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 213 - -
Pumo6g00554 240 MobiDBLite consensus disorder prediction 209 233 - -
Pumo6g00554 240 Gene3D NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
Pumo6g00554 240 MobiDBLite consensus disorder prediction 209 240 - -
Pumo6g00554 240 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
Pumo6g00554 240 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00554 Pumo-Chr6 6982315 6984069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00554 1 174 NAC Transcription Factor Family AT5G13180 60.920 2.83e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00554 NAM 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00554 - - gmx:100812015 450.284