Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00546 ATGCTTTACACACACTTTTTTAAAATACAAACGTCACTCTCTTTAAATTGTGGTCACAGGTTCACACATATGGCAAATAAACTGAATGTAAGGCTAGGAGAACCAACTCTGGTGGCACCTGCAGAAGAAACGAAAAAGGGTCTCTACTTCCTTTCAAACCTTGACCAGAACATAGCACATCAAGTTCGCACGGTTTACTTTTACAAGTCTTCATGTAGAGGCAACGAGGATGCAGCACAAGTCATGAAGGATTCTTTGTCAAAGGTTCTTGTTCACTATTACCCTATGGCTGGCAGATTGGCCATCAGTTCAGAAGTGAAACTTATTATAGACTGCACAGGTGAGGGTGTTGTGTTTGTTGAGGCTGAAACAAACTCTGTGATAAAGGACTTGGGAGATTTGACAAAACCTGACCTTGACACTCTTGGAAAACTGGTTTATGACATCCCTGGTGCAACCAACATGCTTCAGATTCCTCCTTTGATAATTCAGGTGACAAAGTTCAAATGTGGAGGATTTGCTTTGGGCGTAAACGTGAACCATTGCATGAATGATGGTATAAGTGCTATGCAATTTGTGAATGCATGGGGTGAGACAGCCAGAGGCTTGGACTTGAGCATTTCACCATTTCTGGACCGAACTATACTAAGAGCAAGAAACCCTCGAAAAATAGAGTTTGCACACCACGAATTCGATGAAATTGAAGATGTATCAAATGCCACAAAACTCTACGAGGAAGAAGAGATCCTCTACAAGTCCTTCTGTTTCGACCCAGATAAGCTTGAGCTGCTTAAGAAAATAGCCACAGAAGATGGTGTTGTAGAGAAGTGCTCTACTTTTGAAGCACTCACAGCTTTTGTGTGGAGAGCTAGAAGTGAAGCCCTAAGTTTGCACCCTAATCAACAAACCAAGCTACTTTTTGCTGTTGATGGAAGGTCTAAATTCGTGCCTCCAACACCAAAGGGGTATTTTGGGAATGCTATTGTGTTGTCAAATGCTCTATGCAAAGTGGGGGAGTTATTGAACAATCCACTGTCATCGACTGTGGGATTGGTTGGAAAGGCAATTGACATGGTCACAGACAGTTACATGAGATCTGCTATTGACTATTTTGAAGTGAAAAGATCAAGGCCTTCCTTAACAGCAACCCTTGTGATCACAACATGGACTAGGATACCTTTTCGCACTGCGGATTTCGGATGGGGGAACCCCTTCTTCTTTGGGCCTGTAACTTTGCCAGGAAAACATGTCATTTTGTTCTTGTCACATAATGAAGAAAGTAAAAGCATAAACGTGCTCCTGGGTTTGCCTGCTTCTGCCATGAAAAGGTTTGAAAGCCTGATGGAGATCGATATGAATGGTTCACGTTTGAGTTTTAATTAA 1383 0.4208 MLYTHFFKIQTSLSLNCGHRFTHMANKLNVRLGEPTLVAPAEETKKGLYFLSNLDQNIAHQVRTVYFYKSSCRGNEDAAQVMKDSLSKVLVHYYPMAGRLAISSEVKLIIDCTGEGVVFVEAETNSVIKDLGDLTKPDLDTLGKLVYDIPGATNMLQIPPLIIQVTKFKCGGFALGVNVNHCMNDGISAMQFVNAWGETARGLDLSISPFLDRTILRARNPRKIEFAHHEFDEIEDVSNATKLYEEEEILYKSFCFDPDKLELLKKIATEDGVVEKCSTFEALTAFVWRARSEALSLHPNQQTKLLFAVDGRSKFVPPTPKGYFGNAIVLSNALCKVGELLNNPLSSTVGLVGKAIDMVTDSYMRSAIDYFEVKRSRPSLTATLVITTWTRIPFRTADFGWGNPFFFGPVTLPGKHVILFLSHNEESKSINVLLGLPASAMKRFESLMEIDMNGSRLSFN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00546 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 36 446 - -
Pumo6g00546 460 FunFam Spermidine hydroxycinnamoyl transferase 28 231 - -
Pumo6g00546 460 FunFam Tryptamine hydroxycinnamoyl transferase 235 449 - -
Pumo6g00546 460 Gene3D - 233 449 IPR023213 -
Pumo6g00546 460 Gene3D - 24 232 IPR023213 -
Pumo6g00546 460 Pfam Transferase family 33 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00546 Pumo-Chr6 6817674 6822045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00546 27 448 Monolignol Biosynthesis Gene Families AT5G48930 39.130 6.52e-96 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00546 K15400 - gmx:100775546 761.14