Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00536 ATGGAGAAACATCAAGTGTTGTCCCCTATCTCATCTTCATCATCTGCTTCTCCATCTGATTTGAAACTTGGTGATCATAATTATAATGCTCATGTCAAGAAGGCAGGTTTATTAAAAATTCAAAGGCCAAGCCAGAAAGGTGGCAAAGAAATCAAGCAACACAGATATGCATTTCAAACAAGGAGTCAGATTGATATACTGGATGATGGGTACCGGTGGAGAAAATATGGGGAAAAGTCCGTGAAAAACAATAAATTTCCCAGAAGTTACTACAGATGTTCTTATCGAGGTTGCAATGTGAAGAAACAAATCCAACGCCATTCGAAAGACGAAGAGATTGTGGTAACAACCTATGAAGGGATACATATTCATCCTGTGGAGAAGTCAACTGAAAGCTTTGATCAGATATTGAGAAACCATCACATTTACAGCCTAACTCTATAA 444 0.3806 MEKHQVLSPISSSSSASPSDLKLGDHNYNAHVKKAGLLKIQRPSQKGGKEIKQHRYAFQTRSQIDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSKDEEIVVTTYEGIHIHPVEKSTESFDQILRNHHIYSLTL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00536 147 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00536 147 Gene3D WRKY domain 54 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g00536 147 MobiDBLite consensus disorder prediction 1 22 - -
Pumo6g00536 147 FunFam WRKY transcription factor 57 53 127 - -
Pumo6g00536 147 SUPERFAMILY WRKY DNA-binding domain 59 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g00536 147 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 130 IPR044810 GO:0003700
Pumo6g00536 147 Pfam WRKY DNA -binding domain 68 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00536 147 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00536 147 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00536 Pumo-Chr6 6687840 6688979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00536 55 144 WRKY Transcription Factor Family AT5G13080 76.667 4.07e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g00536 WRKY 6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00536 - - gmx:100127378 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00536 6 6687840 6688979 Pumo6g00536 6 6687840 6688979 ECH