Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00534 ATGGACTGGAATCTGAAAGCACCCTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTGGCACCGAATCAGTGTTGACCAAGTCCAAAGATGCTGCTGTTGGAGTCTCCAAAATGACATCCTCATCTTCAGGGTCATCTAAGAGAGCTCGTGCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTGGATGGCTGCCACTCTGACCTCAGTAATTGCAGGGACTATCACAGGCGCCATAAGGTCTGTGAAGTCCACTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTGGTGAATCCTACTTGGGGGGGAGTTCTTACTTCTGGTGACATTAGGCTTCATGGCCACAACCAACAACACCACCACCAAGTGCATTTGGTTGATAAACAGGACCTTTTCCTTGGATCTTCTCCAACCGGTTATAAAGAAGGGAAGCAATTGGCATTCATGCAAGGTGACCACCACAGCCTCAACAACCAGAGCCCACATCTTCCAGGTGCTTCAGTGGGCCAGGCCCAGATGTTTCTTAGGACCGGCCCGTATTCAGAAAGCAGTGGGCTGAGGTGCAAAATGTTCTGTGATAGCCTAACAAGTTCGGTCCACGACAACACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCCCACAGTCCTGGAAATGGATTCAACCAAATGGTGAACCCTCACTCGCCCCTTATGCAACCCTTGGGCCTGAGCCTGCATGATAACAGCCTGGGGTCCGTGGACCCGGTTTTGGGCCCCAATGGGAGTGACCATTCCTCCTCAATGTATAACTTAGGTTCTAATGGACCTCAGGGGAATGAGGCCCCTCCACTGTTTCCCTTTCAATGGTAA 1176 0.5026 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESVLTKSKDAAVGVSKMTSSSSGSSKRARALSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVVNPTWGGVLTSGDIRLHGHNQQHHHQVHLVDKQDLFLGSSPTGYKEGKQLAFMQGDHHSLNNQSPHLPGASVGQAQMFLRTGPYSESSGLRCKMFCDSLTSSVHDNTSRALSLLSSPQPHSPGNGFNQMVNPHSPLMQPLGLSLHDNSLGSVDPVLGPNGSDHSSSMYNLGSNGPQGNEAPPLFPFQW 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00534 391 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Pumo6g00534 391 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Pumo6g00534 391 MobiDBLite consensus disorder prediction 317 337 - -
Pumo6g00534 391 Pfam SBP domain 95 168 IPR004333 GO:0003677
Pumo6g00534 391 MobiDBLite consensus disorder prediction 158 180 - -
Pumo6g00534 391 FunFam Squamosa promoter-binding-like protein 14 86 156 - -
Pumo6g00534 391 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Pumo6g00534 391 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 376 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00534 Pumo-Chr6 6667808 6671561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00534 1 391 SBP-box Gene Family AT5G50670 43.176 3.85e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo6g00534 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00534 - - gmx:100805328 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00534 6 6667808 6671561 Pumo6g00534 6 6667808 6671561 ECH
Pumo6g00534 6 6667808 6671561 Pumo10g01864 10 24654806 24659385 PCT