Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00526 ATGCCTCAGGGAAGCCTTGAAGTTTTTCTTGTTAATGCCAAAGGCCTTGAGAACACTGATTATCTTTGTAACATGGACCCTTATGTGATCCTCATATGTCGCACTCAGGAGCAAAAAAGCAGTGTTGCATCAGGTCACGGAAGTGAGCCAGAATGGAACGAGAATTTTGTATTCAACGTGTCTGAAGGAGTTTCCGATCTCAGATTGAAGATCATGGACAGTGATTCCACGACAGCTCATGATTTCGTTGGAGAAGTTAGCATTCCACTGGGTGCATTGTTTACTGCAGGAAGTATCCCACCTACTTCATACAATGTTGTCAAGGATGGCCACTATTGTGGGGAGATTAGAATTGGCCTCACTTTTACGCCTCAGGATCGCAGCGAACGCGGCCTAGAGGAAAATTTTGGGGGATGGAAGGAGTCTGGTTACAGAGACTGA 441 0.4558 MPQGSLEVFLVNAKGLENTDYLCNMDPYVILICRTQEQKSSVASGHGSEPEWNENFVFNVSEGVSDLRLKIMDSDSTTAHDFVGEVSIPLGALFTAGSIPPTSYNVVKDGHYCGEIRIGLTFTPQDRSERGLEENFGGWKESGYRD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00526 146 Gene3D C2 domain 2 125 IPR035892 -
Pumo6g00526 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
Pumo6g00526 146 SMART C2_3c 5 102 IPR000008 -
Pumo6g00526 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Pumo6g00526 146 PANTHER C2 DOMAIN-CONTAINING 1 126 - -
Pumo6g00526 146 Pfam C2 domain 4 95 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00526 Pumo-Chr6 6537640 6541097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00526 4 128 C2H2 Transcription Factor Family AT4G21160 26.400 3.71e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00526 - - gmx:100782974 284.263