Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00521 ATGTGGGGTTGGATGCTTGGCGAAGGCCGTAGGGGAGCGTGCAGCTGGAACTGGGTGGCGCTCCGAAAGATGGGTGGCGGTCCTCGCACCTTTCCGGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAACTCGCCAGAGACAAACAGAAGAGACTCATCGACCAAGAGAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGCTCCACCCTCTCCCCCGACCACCGCTCCGCCGCCGCCGCCACCCACCGCCCCCTCTCCCCCAACGACCACGTCAGAGCCCTCGCCGATCGTTTCGTCAAAGACGGCGCCGAAGATCTCTGGAACAACCACGACGGTCCCCTCACTCCGAACCTCAAACACACCAGGGGTTACCGTTCTGTTCCCGAGGTTGGGGCCCACAAGTATAGGTTTTGGCGGAAGGGTAGTGATGACTCTTCTTCCAGTGAGAGCGAAGTTGAATTGAGTTTGAAGACGGGTAGTACTGCTTCTTTGGGGGAATATGATGTCAAGAGACAGGGGAGGGTTCTGCCCAAGACATCTGAAGAGGTTGAGTTTATCAGGAATGAGCTTAATAAGAGGAAGTTGAGCCAAATTCAGGAGCAACAACAAAGCAATGAAAGCATCCTGAGCAACACAAGATTTGATGAGTGTGCTATATCGCCGCTGACGGTCAAGGCGCTTTCTTCAGCTGGTTATGGTCATATGACCCGCATCCAAGAGGCTAGCCTACCTATTTGCCTTGAGGGGATGGATGCTTTAGTCAAGGCTAAAACTGGCACTGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACGTCTCAACGGGTGCCTCCAATATATGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCAAAGGTTTTGCTGAAATATCATGATGGCATCGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCACATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTCAGAAAGGATGTAGAAAAAATTGTTGATTGTTTGCCCCGTCAGCGGCAATCTTTGCTGTTTTCTGCAACCATACCAAAGGAGGTCCGTCGTATATCTCAGCTTGTTTTGAAAAGGGATCACAAATATGTTGATACAGTTGGAATGGGTTGTGTAGAAACTCCTGTTAAGGTGAAGCAATCTTATCTTATTGCTCCTCACGAGTCACATTTTCAATTAGTGCACCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGACATCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTTACCTTAGTCATACAGGTGGGAATTCCTTCTTACCGTGAACAATACATACACCGTCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGGAAGGCGTATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTACCTCTACAAAAATTCCCCTTACCAGATATAGATCCACAGACAAAGCTTAAGATTGAGAATTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCACTCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAAATAA 2061 0.4609 MWGWMLGEGRRGACSWNWVALRKMGGGPRTFPGGVNKWKWKRMHEKLARDKQKRLIDQEKQLYEARIRSHIRSTLSPDHRSAAAATHRPLSPNDHVRALADRFVKDGAEDLWNNHDGPLTPNLKHTRGYRSVPEVGAHKYRFWRKGSDDSSSSESEVELSLKTGSTASLGEYDVKRQGRVLPKTSEEVEFIRNELNKRKLSQIQEQQQSNESILSNTRFDECAISPLTVKALSSAGYGHMTRIQEASLPICLEGMDALVKAKTGTGKSVAFLLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYHDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHKYVDTVGMGCVETPVKVKQSYLIAPHESHFQLVHHILKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSYREQYIHRLGRTGREDKEGEGVLLIAPWEEYFLDEIKDLPLQKFPLPDIDPQTKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00521 686 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 217 245 IPR014014 GO:0003724
Pumo6g00521 686 Pfam Helicase conserved C-terminal domain 464 568 IPR001650 -
Pumo6g00521 686 Pfam DEAD/DEAH box helicase 241 419 IPR011545 GO:0003676|GO:0005524
Pumo6g00521 686 Gene3D - 182 433 IPR027417 -
Pumo6g00521 686 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 431 IPR014001 -
Pumo6g00521 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 587 IPR027417 -
Pumo6g00521 686 CDD SF2_C_DEAD 446 579 - -
Pumo6g00521 686 SMART helicmild6 489 570 IPR001650 -
Pumo6g00521 686 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 615 IPR001650 -
Pumo6g00521 686 PANTHER RNA HELICASE 187 615 - -
Pumo6g00521 686 Gene3D - 441 665 IPR027417 -
Pumo6g00521 686 SMART ultradead3 236 447 IPR014001 -
Pumo6g00521 686 FunFam Putative LRR receptor-like serine/threonine-protein kinase 272 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00521 Pumo-Chr6 6504404 6508257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00521 208 596 Eukaryotic Initiation Factors Gene Family AT3G19760 26.601 5.24e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00521 - - gmx:100808520 1245.72