Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00518 ATGGCGTTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGACAAAACTGTTCATTTCGTCGAGGGTTTATCTGCCGATGGGGCTGCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAAGCAACTACTCATCCAGCGAAGGAATTTTGTACTGCAAGGTACACTTTGAGCAGCTTTTCAAGGAAACTGGAGCCTTCCCCAAGAAAACCCAGTCGTCTGGAAAGCCTCCAAGCGATCTGAATAGAGCACCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACCGTGGAAGGAGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTCGATGGATATCTTTACTGCAAGCCCCACTTCTCTCAATTGTTCAAGGAGAAGGGTAGCTACAGCTATTTGTCCAAGCAAACTTCATTGAAGAAAAGTGAAAAAGAACAACAAGAACAAGAGGCTGTGGAGAAAACAACTGATGATGAACGCTCAGAGTCAGAGGCAGAGCCAGAGCAAGAGCCAGAGGCAGAGACAACAACAAAGGAAGCTGAACATGAACAACAAGCTGATGAAGATCACTCTGAGCAAGAGCACTAG 696 0.4583 MAFSGTQQKCKACDKTVHFVEGLSADGAAYHKNCFRCSHCNGLLAISNYSSSEGILYCKVHFEQLFKETGAFPKKTQSSGKPPSDLNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQTSLKKSEKEQQEQEAVEKTTDDERSESEAEPEQEPEAETTTKEAEHEQQADEDHSEQEH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00518 231 Pfam LIM domain 10 65 IPR001781 -
Pumo6g00518 231 Pfam LIM domain 104 159 IPR001781 -
Pumo6g00518 231 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Pumo6g00518 231 MobiDBLite consensus disorder prediction 207 231 - -
Pumo6g00518 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pumo6g00518 231 Gene3D Cysteine Rich Protein 98 168 - -
Pumo6g00518 231 Gene3D Cysteine Rich Protein 4 74 - -
Pumo6g00518 231 FunFam LIM domain and actin-binding 1 4 74 - -
Pumo6g00518 231 FunFam LIM domain and actin-binding 1 98 168 - -
Pumo6g00518 231 MobiDBLite consensus disorder prediction 173 231 - -
Pumo6g00518 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pumo6g00518 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Pumo6g00518 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Pumo6g00518 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Pumo6g00518 231 CDD LIM1_SF3 6 68 - -
Pumo6g00518 231 PANTHER OS06G0237300 PROTEIN 94 167 - -
Pumo6g00518 231 SMART lim_4 9 61 IPR001781 -
Pumo6g00518 231 SMART lim_4 103 155 IPR001781 -
Pumo6g00518 231 MobiDBLite consensus disorder prediction 174 197 - -
Pumo6g00518 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00518 Pumo-Chr6 6488490 6490050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pumo6g00518 LIM 2.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00518 - K09377 gmx:100499865 389.037