Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00514 ATGAAGTTATATACTTCATTGTTGTTACTTGGTTTAGTTTCCATGATCTCTTTTGTGGCTTCTGTCATGGTGCCTTCAAATGAAGTTTTGGCACTTAAAACTTTCAAGGAAGCTGTGTATGAAGATCCACATATGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCTTTGTGACTGGAATGGTGTTTCTTGCACTGCAACTCGAGATCATGTCATCAAGCTTAACATATCAGGAGCTTCATTAAGGGGATTTCTTGCTCCAGAATTTGGGAAAATCACCTACTTACAAGAACTGATCTTGCATGGCAACAGTCTCATTGGAGTGATACCAAAAGAATTGGGCAGGTTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTAACTGGACCAATTCCTCCGGAGATTGGAAATTTGACCCAAGTTATGAAAATAAACCTGCAGTCCAATGGGTTGACTGGTAGGCTACCTCCAGAGCTAGGAAATTTGAAATACCTTCAAGAGCTTCGGCTGGATAGGAATAAGCTTCAAGGATCTCTTCCTGGTGGTGGCAGTTCAAATTTTTCTTCAAATATGCATGGGATGTATGCCTCAGGTGTGAATTTAACTGGCTTCTGTCTTCCATCTCAGTTAAAAGTTGCAGATTTTTCATATAACTTTTTTGTTGGTAGCATACCCAAATGCTTGGCATATCTTCCAAGATCAAGCTTTCGAGGAAATTGTCTCCATATCAAAGACATAAAACAGCGGACTTCAGTGCAATGTGCTGGTGCTTCACCTGCCCAAAGCGGTCCAGTAGTGAACCCAAAGTACCAACGTAACCAACCTGCTACTAAACATGTGACCAAGCATCAAGAAGCATCAAAACCTGCTTGGCTTTTGGCTCTAGAAATAGTGACGGGAACCATGGTTGGTTCTCTCTTTGTTATTGCTATTCTCACCGCGATTCAGAGGTGTAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGCGGAAAAGATTATATGGCAGTACATATAGACTCTGAGATGTTGAAGGATGTGACGAGGTATAGCAGACAGGACCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGGCCTGAGATTGCTGTGATTTCCCTCTGCATCAAGGAAGAGAATTGGACAGGATACCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGATAACACAGGAAAGCTGCTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTGTAAGCCACGGTTCTTAGCTCGTTTACATGTATTTTTTTTTCTGTGTGTGTGTTTCAATTCCTTAAAGCATTATGAAATCATGGCTACAGATGAAGAAGGTTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAGGCATTGCACGTGGACTCAAGTATTTGCACACTGAAATTGAGCCGCCATTCACTATCTCAGAATTGAATTCCAATGCCGTTTACCTCACAGAAGATTTTTCCCCCAAGCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAAAATTCCGGTTCTGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTCTTGAAGCGCGCCGACTTGACACCAAAGGAAACATCTATGCTTTTGCAGTACTTCTATTGGAGATAATCAGTGGGAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCTAGGGATTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTGGATCCTGAGTTGAAACATTTTAGATATGAAGACCTCAAAGCAATATGTGAGGTGATAACTCTTTGCATCAGTCCCGATCCCTCTGTCCGTCCATCAATACGTGAATTATGCACTATGTTGGAGAGCAGAATAGACACATCAATAAATTTGGAGCTAAAGGCATCATCACTGGCTTGGGCTGAACTAGCACTTTCATCATAA 2088 0.4119 MKLYTSLLLLGLVSMISFVASVMVPSNEVLALKTFKEAVYEDPHMVLSNWNTLDSDLCDWNGVSCTATRDHVIKLNISGASLRGFLAPEFGKITYLQELILHGNSLIGVIPKELGRLKSLKVLDLGMNQLTGPIPPEIGNLTQVMKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGSLPGGGSSNFSSNMHGMYASGVNLTGFCLPSQLKVADFSYNFFVGSIPKCLAYLPRSSFRGNCLHIKDIKQRTSVQCAGASPAQSGPVVNPKYQRNQPATKHVTKHQEASKPAWLLALEIVTGTMVGSLFVIAILTAIQRCNNKSSIIIPWKKSASGKDYMAVHIDSEMLKDVTRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLARLNHDNTGKLLGYCRESSPFTRMLVFEYASNGTLYEHLHCCKPRFLARLHVFFFLCVCFNSLKHYEIMATDEEGCQLSWTRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGAVCVLPNSLEARRLDTKGNIYAFAVLLLEIISGRPPYCKDKGYLVDWARDYLEMPEVMSYVVDPELKHFRYEDLKAICEVITLCISPDPSVRPSIRELCTMLESRIDTSINLELKASSLAWAELALSS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00514 695 PANTHER PROTEIN MALE DISCOVERER 2 19 459 - -
Pumo6g00514 695 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Pumo6g00514 695 FunFam Inactive receptor-like serine/threonine-protein kinase 340 447 - -
Pumo6g00514 695 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Pumo6g00514 695 SUPERFAMILY L domain-like 27 235 - -
Pumo6g00514 695 MobiDBLite consensus disorder prediction 259 284 - -
Pumo6g00514 695 Gene3D Transferase(Phosphotransferase) domain 1 479 684 - -
Pumo6g00514 695 MobiDBLite consensus disorder prediction 259 280 - -
Pumo6g00514 695 ProSiteProfiles Protein kinase domain profile. 366 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00514 695 Gene3D Ribonuclease Inhibitor 24 257 IPR032675 -
Pumo6g00514 695 Gene3D Phosphorylase Kinase; domain 1 340 447 - -
Pumo6g00514 695 Pfam Protein tyrosine and serine/threonine kinase 370 668 IPR001245 GO:0004672|GO:0006468
Pumo6g00514 695 SUPERFAMILY Protein kinase-like (PK-like) 359 677 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00514 Pumo-Chr6 6357749 6363059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00514 7 675 Receptor kinase-like Gene Family AT2G35620 27.114 1.00e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Pumo6g00514 PK_Tyr_Ser-Thr 8.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00514 - - gmx:100781978 1217.22