Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00510 ATGGGCACCAAGTTTTTAGCGTTAGCTTGTATACGTAACAATGAGGGTTCGGGGCACCTATCACCGCGACCTCACTACCCGTCGATGCCGAGATACCCTAAGGGCGTGACGGAAGAAGAAGGGAGCAGCAACATATCGTCCAAGGCACTTTTCTCGGTCACCGGAATGACTTGCTCCGCCTGCGCCGCCTCCGTCGAGAAAGCCGTCAAGCGCCTTCCCGGAATTCGCCAAGCCGTCGTTGATGTTCTCAACAACCGTGCTCAAGTCCTCTTCTACCCATCCTTTGTTAACGAAGAGACCATTCGCGAAGCAATTGAAGATGCTGGATTCCAAGCCACACTAACCAGAGATGATAACGAGACATCTGTTCAGATATGCCGCATACGTATCCAAGGCATGACATGCACGTCGTGTTCCTCCACCGTTGAATCCGCTCTACAATCAATCCAAGGAGTGGTGAAAGCCCAAGTGGCTCTTGCAACCGAGGAAGCTCAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGCTGTAGAAGACACCGGTTTTCAAGCCACGCTTATAAGCACAGGTGAAGACATGAGCAGAATAGACCTTCAAGTTGAGGGTGTAAGAACTGGTCGTTCCATGAGACTCATTGAAAATTCTCTTCAGGCCCTCCCTGGGGTCCAAGGTGTAGAAACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTGACAGGACCTAGAAACTTCATCAACGTGATTGAAGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCTGAAGGAGGAAGAAGGAATAGTCATAGGAGGGAGGAAATCAAGCAATACTATAGATCCTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTGTTTCTAACCTCTATGGTGCTTATGTATATCCCTGGAATTAAGCATGGACTAGATGCTGAAGTTGTGAACATGCTTACAGTGGGGGAGATTATAAGATGGGTGCTTTCTACACCAGTGCAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAATGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTCAGGGTTTCAAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTTATTTCGTTTATTTTGCTAGGAAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACTCCTGATACTGCTATATTGTTGACCCTGGACAGTGAAGGGAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAAAAGAATGATGTGATTAAGATTATTCCTGGTGCAAAAGTGGCTTCAGATGGATTTGTTATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATTACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGTGACACTGTTATTGGAGGAACTCTGAATGAGAATGGAGTGTTGCATGTTAAGGCTACGTGGGTTGGATCAGGGAGTGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTCTGGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTGGCTGGAAGATTTCATGCTTACCCTAAGTCTTGGATACCATCTTCCATGGATAGCTTTCAGCTAGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGCGAATTCTATGAATTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATAGTTGAGTATGCCAAAAAACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGCACGTGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAACAAGGAAATACTTGTGGGTAACAAGACCTTGATGGCGGACCACAATGTTGCACTTCCCGTTGATGCTGAAGAGATACTTGCAGAAGCGGAAGAAATGGCTCAAACTGGAATTATAGTGTCTATAAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCGGCTGCACAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGAGACAATTGGGGAACTGCCAATTCTATAGCAGGGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAGCAGAAGGCAGAGCAAGTGAAGGAACTGCAGGCTTCTGGGTACAGGGTGGCTATGGTGGGGGATGGTATTAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTGCCATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACGTTTACCCGTATCCGCCTCAACTACATATGGGCTTTGGGTTATAATCTGCTTGGCATTCCAATTGCTGCTGGAGCTCTTTTTCCTTCTACACGATTTCGGTTGCCCCCATGGGTTGCTGGGGCTGCCATGGCTGCATCTTCTGTCAGTGTTGTGTGCTGCTCTCTACTGTTGAAGTATTATAGGAGACCCAAGAAGCTGGACAACCTTGAGATACGGGGCATAAGCATTGAGTGA 2952 0.4583 MGTKFLALACIRNNEGSGHLSPRPHYPSMPRYPKGVTEEEGSSNISSKALFSVTGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNEETIREAIEDAGFQATLTRDDNETSVQICRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAQVHYTPNVVTYNQILEAVEDTGFQATLISTGEDMSRIDLQVEGVRTGRSMRLIENSLQALPGVQGVETHPLLNKVSLSYKPDLTGPRNFINVIEETGSRRFKAKIFPEGGRRNSHRREEIKQYYRSFLWSLVFTIPVFLTSMVLMYIPGIKHGLDAEVVNMLTVGEIIRWVLSTPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSQGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKATWVGSGSALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGRFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLREFYEFVAAAEVNSEHPLAKAIVEYAKKLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMADHNVALPVDAEEILAEAEEMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTANSIAGEVGIETVIAEAKPEQKAEQVKELQASGYRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFTRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00510 983 Gene3D - 418 540 - -
Pumo6g00510 983 SUPERFAMILY HAD-like 649 960 IPR036412 -
Pumo6g00510 983 Pfam E1-E2 ATPase 449 628 - -
Pumo6g00510 983 CDD P-type_ATPase_Cu-like 289 964 - -
Pumo6g00510 983 SUPERFAMILY HMA, heavy metal-associated domain 195 262 IPR036163 GO:0046872
Pumo6g00510 983 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Pumo6g00510 983 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Pumo6g00510 983 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Pumo6g00510 983 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Pumo6g00510 983 NCBIfam HAD-IC family P-type ATPase 403 935 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo6g00510 983 Gene3D - 44 115 - -
Pumo6g00510 983 NCBIfam copper ion binding protein 50 112 IPR006122 GO:0005507
Pumo6g00510 983 NCBIfam copper ion binding protein 128 189 IPR006122 GO:0005507
Pumo6g00510 983 Gene3D - 124 196 - -
Pumo6g00510 983 FunFam Copper-transporting ATPase 1, putative 418 540 - -
Pumo6g00510 983 FunFam Copper-transporting ATPase HMA5 46 117 - -
Pumo6g00510 983 Gene3D - 617 911 IPR023214 -
Pumo6g00510 983 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 929 IPR023298 -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 877 889 - -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 779 790 - -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 801 811 - -
Pumo6g00510 983 PRINTS P-type cation-transporting ATPase superfamily signature 650 664 - -
Pumo6g00510 983 ProSitePatterns E1-E2 ATPases phosphorylation site. 652 658 IPR018303 -
Pumo6g00510 983 ProSiteProfiles Heavy-metal-associated domain profile. 199 265 IPR006121 GO:0046872
Pumo6g00510 983 Gene3D - 199 261 - -
Pumo6g00510 983 NCBIfam heavy metal translocating P-type ATPase 363 963 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo6g00510 983 SUPERFAMILY HMA, heavy metal-associated domain 48 118 IPR036163 GO:0046872
Pumo6g00510 983 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Pumo6g00510 983 FunFam Copper-transporting ATPase HMA5 123 194 - -
Pumo6g00510 983 CDD HMA 128 190 IPR006121 GO:0046872
Pumo6g00510 983 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 979 - -
Pumo6g00510 983 SUPERFAMILY HMA, heavy metal-associated domain 123 195 IPR036163 GO:0046872
Pumo6g00510 983 CDD HMA 51 113 IPR006121 GO:0046872
Pumo6g00510 983 SFLD Haloacid Dehalogenase 632 906 - -
Pumo6g00510 983 MobiDBLite consensus disorder prediction 19 40 - -
Pumo6g00510 983 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Pumo6g00510 983 Gene3D - 735 785 IPR023299 GO:0000166
Pumo6g00510 983 Gene3D - 657 734 IPR023299 GO:0000166
Pumo6g00510 983 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Pumo6g00510 983 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Pumo6g00510 983 SFLD p-type atpase 632 906 IPR044492 -
Pumo6g00510 983 SUPERFAMILY Calcium ATPase, transduction domain A 450 536 IPR008250 -
Pumo6g00510 983 FunFam Probable copper-transporting ATPase HMA5 772 911 - -
Pumo6g00510 983 Pfam Heavy-metal-associated domain 128 187 IPR006121 GO:0046872
Pumo6g00510 983 Pfam Heavy-metal-associated domain 51 110 IPR006121 GO:0046872
Pumo6g00510 983 Pfam haloacid dehalogenase-like hydrolase 646 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00510 Pumo-Chr6 6332651 6338446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00510 1 983 Primary Pumps ATPases AT1G63440 76.334 0.0 1539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00510 K17686 - gmx:100810141 1826.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00510 6 6332651 6338446 Pumo6g00510 6 6332651 6338446 ECH
Pumo8g02307 8 60311235 60317458 Pumo6g00510 6 6332651 6338446 PCT