Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00505 ATGGATGGGAGAGAAGTTATGGCATTCTCTGGTGGCTCAGCTCCATATTACATGCATAGAGGAGGGTTTGGAGGGTCTGGTTCTGGAACACAGAGTGGGGGAGGGGGGTTCCAACCAGCCCCTGGGTTCAGACCTTTGACAAACACTGGCATTCAAGCTGAGTCAAATGCAAGGGTTCATGGGGGTGGTTCTTTAGGGTCTAGTTCCCCATTTTCAGTAGAGCCTCCTCAGGCTCGTGCCAATTTTAACCATGGCATTGGCATTGGGGCACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGACCCCGGAAATATGGTCCTGATGGTGCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCAAACTCCACTCAGGATGCAAGTGAAACCACCTCTTCTCAGAAAAAGGCTAGAGGGCGCCCTCCTGGCTCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGGTTGGCCTTTTCGCCACATGTTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAGTTATTGTCATTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCGGGCACTGGGACAGTTTCTTCAGTCACTCTGCGACAGCCTGCTTCTACCAATGCCAGTGTAACGTTCGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGCCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCCGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACCAAGGCTAAACAAGTGACAACTACCAAAGATGAAAGTTCTGAGCCGCCTCAGCATGACGATAAGTTAGCTTCTCCAGCCAGTGGTCCACCTGGTCAAAATCAACACTACCTCCCTTCTGCTACAAACGTTTGGCCTGGATCACGACCAGCAGAGCTGAAAAGTGCGCACACATATACTGGCATCGACTTGACTCGTGGGTGA 1065 0.5005 MDGREVMAFSGGSAPYYMHRGGFGGSGSGTQSGGGGFQPAPGFRPLTNTGIQAESNARVHGGGSLGSSSPFSVEPPQARANFNHGIGIGAPSSEPVKKKRGRPRKYGPDGAVSLRLSPMSAPANSTQDASETTSSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKAKQVTTTKDESSEPPQHDDKLASPASGPPGQNQHYLPSATNVWPGSRPAELKSAHTYTGIDLTRG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00505 354 Gene3D - 169 299 - -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 290 354 - -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 315 329 - -
Pumo6g00505 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 283 - -
Pumo6g00505 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 48 76 - -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 292 306 - -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 118 140 - -
Pumo6g00505 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 70 311 IPR039605 GO:0003680
Pumo6g00505 354 CDD DUF296 169 281 IPR005175 -
Pumo6g00505 354 ProSiteProfiles PPC domain profile profile. 161 303 IPR005175 -
Pumo6g00505 354 MobiDBLite consensus disorder prediction 18 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00505 Pumo-Chr6 6286561 6290646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00505 1 354 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.612 5.82e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00505 - - gmx:100798706 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00505 6 6286561 6290646 Pumo6g00505 6 6286561 6290646 ECH
Pumo8g02320 8 60429163 60433859 Pumo6g00505 6 6286561 6290646 PCT