Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00504 ATGGGTTGTGGCTTTTCCAAGTACACAGCGTGCTGCACTGGTACTGAGCAAGATGGTCCGGCTGCTGAGGCTCAGGTTGATGGTGGTAAGTGTTTGAATGTGCCTAGTTTCTGTTCTTGCTGCTCTGAGAGTGATTGCTGTATCTGTGTTTATATTTCTTGTTCAGGAAACGAAGACAATGTTGTTGAGGGTGTTGACTTGCCATGGTTTCATGAATTCACAATTGACCAGCTTAGGAGGGCTACGTCCGGATTTGCCATTGAAAATATAGTTTCTGAACATGGAGAAAAGGCTCCAAATGTGGTCTATAAAGGGAGACTTGATAATCAGATGCGAATTGCTGTCAAACGGTTCAACAGAAATGCCTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTAAGGAACCAAAGATTGGTAAATCTGCTTGGATGCTGTTGTGAGGGTGAAGAGAGGTTACTGGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTGGGAAACTCAGCCCATGAGATGGGCAATGCGAATGAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCATTTACTCCACCTGAATATCTGAGGACAGGCAGAGTTACACCAGAAAGTGTAACTTACAGTTTCGGAACCCTTCTGCTTGACCTCCTAAGTGGCAAGCATATTCCTCCAAGTCATGCCCTTGACTTGATTAGAGATAAGAACCTTCAGATGCTATCAGACTCTTGCTTAGAAGGAGAGCTTACAAATGATGACGGGACTGAATTAGTGCGTCTAGCCTCACGATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGTTCCTTCTCATGTGCTGATGGGTATACCAGATGGTACAGCTGCTTTTCCCCTTTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGCGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAAGGGGACGCTGCTTTTCGGCATAAGGACTTTAAAACTGCAATTGATAGCTATACGATGTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTCTATGTTATCTGATGAACAATATGCCCGATGAAGCACTTAATGATGCAATGCAAGCACAAGTAATATCCCCCGTTTGGTACATTGCGTTTTATTTACAAGCTGTTGCTCTTTTAGCACTGGGCAAGGAGAATGATGCCCAAGTGGCACTTAAAGAGGGTTCGTCGCTTGAAACTAAAAAGAGCACAAATTAG 1551 0.4423 MGCGFSKYTACCTGTEQDGPAAEAQVDGGKCLNVPSFCSCCSESDCCICVYISCSGNEDNVVEGVDLPWFHEFTIDQLRRATSGFAIENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGEERLLVAEYMPNDTLAKHLFHWETQPMRWAMRMRVALCLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELTNDDGTELVRLASRCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVLMGIPDGTAAFPLSPLGEACLRMDLTALHEVMEKIGYKDDEGAATELSFQMWTNQMQETLNSKKKGDAAFRHKDFKTAIDSYTMFIDVGTMVSPTIYARRSLCYLMNNMPDEALNDAMQAQVISPVWYIAFYLQAVALLALGKENDAQVALKEGSSLETKKSTN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00504 516 SUPERFAMILY TPR-like 415 509 IPR011990 GO:0005515
Pumo6g00504 516 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 62 514 IPR045845 GO:0004672|GO:0009742
Pumo6g00504 516 Pfam Protein tyrosine and serine/threonine kinase 101 338 IPR001245 GO:0004672|GO:0006468
Pumo6g00504 516 FunFam probable serine/threonine-protein kinase At4g35230 60 163 - -
Pumo6g00504 516 FunFam probable serine/threonine-protein kinase At5g41260 165 356 - -
Pumo6g00504 516 FunFam probable serine/threonine-protein kinase At4g35230 409 516 - -
Pumo6g00504 516 ProSiteProfiles Protein kinase domain profile. 88 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00504 516 Gene3D Tetratricopeptide repeat domain 398 510 IPR011990 GO:0005515
Pumo6g00504 516 SUPERFAMILY Protein kinase-like (PK-like) 67 348 IPR011009 -
Pumo6g00504 516 Gene3D Transferase(Phosphotransferase) domain 1 165 356 - -
Pumo6g00504 516 Gene3D Phosphorylase Kinase; domain 1 63 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00504 Pumo-Chr6 6271110 6281225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00504 73 364 Glycoside Hydrolase AT3G07070 32.812 2.90e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Pumo6g00504 PK_Tyr_Ser-Thr 6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00504 K14500 - gmx:100797107 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00504 6 6271110 6281225 Pumo6g00504 6 6271110 6281225 ECH