Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00494 ATGAAGAAACAGCTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAGCTACCCAACCCGGGGTGTTGAGCTGGGGGGAAGGGTATTACAATGGAGACATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTCAATTCTGACCAAATAGGGTTGCAGAGGAGTGAACAGCTGAGAGAGCTATTCAAATCCCTCAAAACTGTAGAAATCAGCCCACAAACCAAAAGGCCTTCAGCAGCACTGTCCCCAGAAGATCTCACACATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGTGAGTGGTCAACCCATTTGGCTGAACAATGCCCATTCCGCTGATTGTAAAATTTTTAGCCGTTCTCTTCTGGCAAAGGTGGATTCTACGGTTGTGTGCTTTCCGTTTAGGGAAGGGGTTATTGAGCTAGGTACTACTGAACAGGTCCCAGAAGATTTGAGTGTCATTGAACGGATCAAAACTTCTTTCTTGAATAGTCTGCATGTCAATGTTCCCAATAAGTCAGTAGCTGCATTGAAATCAAGGAACCAGGAAGATCTTTCTTGTGTAGCATTTGATCATAATGCCTATAATGTTGAATCAATTCCAGAAGTTGGGTATGAAATAGCCAACACAACCTCTCCTAATGGTAGTTCAAATGCATTCCGAGCCAATCAACCACTAGATGAAACATTTATGGTTGAAAGTATAACCAATGGCACGTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGTAACTGTGTCCATAACTCCATGAATTCCAGTGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTGCTTCTGCCTGTAATAACCCTTCTGACCCTTGTGCCCGAGATCTTCAAAAGTGCAACAACCCAAAAATGACCTTAGTGGAACCTCGAAGTGATGATCGGCATTATCAGAGAGTTCTTTCTACCCTTACAAAAAGCTCTGACCAGCTACATATGGGAATGCATTTACAAAAAATTCCTCAGGAATCAAGCTTTGTTAGTTGGAGGAAAGGACAGCCAATGGATTGCCAATGGCCAAGAGCAGGAACCTCACAAAAGTTATTGAAGAAAGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGATGGAATGAGAGTAGAGGCTGATGAAAACGGCATGAACCATGTTATGTCAGAAAGGAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACACTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCACAGGGGGGTAACAGATATAGAGACTGGGACTAGAAGATCACCTCAAGATACGGTGGAGAGGACTTCTGATCATTATTTTAGCAAAAATAATAATGGCAAGAAACCAGGGGTAAAAAAGAGGAAGGCTTGTGGTGTAGATGAGACAGGAAGAGAGATTAATTCAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTACTGTGAGTACCAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCGAGAGCAGGAAGGCTGCTAGAAATTATGGAAGCAGTTAACAGTTTCAATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGACCAAGTGTTGCAACAGCCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCCAAGTGCTGA 1863 0.4122 MKKQLALAVRSIHWSYAIFWTDSATQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTVEISPQTKRPSAALSPEDLTHAEWYYLVCMSFIFNIGQGLPGRTLVSGQPIWLNNAHSADCKIFSRSLLAKVDSTVVCFPFREGVIELGTTEQVPEDLSVIERIKTSFLNSLHVNVPNKSVAALKSRNQEDLSCVAFDHNAYNVESIPEVGYEIANTTSPNGSSNAFRANQPLDETFMVESITNGTSQVQNWQVIDDELSNCVHNSMNSSDCISQTFASPENIASACNNPSDPCARDLQKCNNPKMTLVEPRSDDRHYQRVLSTLTKSSDQLHMGMHLQKIPQESSFVSWRKGQPMDCQWPRAGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKDGMRVEADENGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEAHRGVTDIETGTRRSPQDTVERTSDHYFSKNNNGKKPGVKKRKACGVDETGREINSDALKGSYANDVTVSTSDNEIVIEMKCPSRAGRLLEIMEAVNSFNIDFNSVQSTEADGNLYLTIKSVFTGPSVATAKRIKQALQKVASKC 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00494 620 Pfam Helix-loop-helix DNA-binding domain 422 468 IPR011598 GO:0046983
Pumo6g00494 620 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 421 480 IPR036638 GO:0046983
Pumo6g00494 620 SMART finulus 424 473 IPR011598 GO:0046983
Pumo6g00494 620 MobiDBLite consensus disorder prediction 484 504 - -
Pumo6g00494 620 Gene3D - 412 480 IPR036638 GO:0046983
Pumo6g00494 620 MobiDBLite consensus disorder prediction 484 516 - -
Pumo6g00494 620 PANTHER TRANSCRIPTION FACTOR TT8 2 618 - -
Pumo6g00494 620 Coils Coil 457 484 - -
Pumo6g00494 620 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 182 IPR025610 -
Pumo6g00494 620 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 418 467 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00494 Pumo-Chr6 6175103 6178303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00494 1 620 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.522 3.81e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g00494 bHLH-MYC_N 2.4e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00494 - - gmx:100808167 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00494 6 6175103 6178303 Pumo6g00494 6 6175103 6178303 ECH