Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00488 ATGCGGTTGTGGTGGGGAAAGTCTTCTTCTTCCAAAGAGGCAAAGAGGAAGGCAAACAGGGAAAGTATTATTGATACAATACCGAAGAGGAATACAAACAGGGAAAGTATTATTGATACAATACAGCGGAAATTAAAGAATACTTCCGAAGAGAAGTGCAATAATAAATCAGGAAGATCAAGGAGACATCGTGATGATGCTATATCTAAGAAGGGATCTAGATCTTTCGGACCTTCAAGATCATCATCACCCTCAACACATGAGTTCCGCTCTCAAAGTTTTTCAGAAAGGCCTCTTTCTCAACCACTCCCATTACCAGGGTCACATCTTCCAGCTGCCATTGATGTAAATTCTGGAGTTATTTTAACATCAAAACTGGAAAGAGCCATAGGCTCTAAGCCATCTCTGTATTTTCCTCTTCCAAAACCTGCCTATGTATCAAACAAGGAAGATCCTACAGATGCAGAAGGAGATATAGTCACTGCATCTGTTTCTAGTGACAGCTCAATTGATAGTGGCAACTCATTTGATTCGCCGCATCTTGTTAGTCCTCTGGCATCTGACTGTGAAAATGGAAACCAAGCCACCATTAATAGTTCTTTCAGTGTGGTGCACAAGAATCAGTCTCTTATTACTATCCAAAGAAACTCAAGAGCATCCTCAAAACCAGCTCCTCAGTTGTGCAATAATAAGCCTTTATCCACCTCACCAAGAGGGGTTCCTTTACATCCGCAAAATCTGCAAATAGCTCGACCAGGTGGTTTGTGTAGTGCTCCAAATAGTTCAATGTCAAGTCCTTCTAGAAGTCCAATGGGAGCATTTGGTCCTGAGCAAATGTTGAACTCTGAATTACAGACAGGAAAGCCTTATCCAGATATAGCTTCTGGGCACTGCTATAATCCGGTTTCAGGCCATAATTCAGTTGGTGGGGATATTTCAGGACAGATGATTTTGCCACAGAACAGGTGTAGCCCCGAGTGTTCTCCAATACCTAGTCCCAGGATTACAAGCCCTGGTCCCAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATCCTAAAGCTGGAGGCACTGCAGCAGAAGCATCTACAAGACGTCCTGATGATGTGAAACAAAAAAATCATCAGTTAGCAATTCCTCCAATAACAGTCACTAAATCTTATTCGATTTCTCCAACCTATTCTGCATCCACAACTCCTTCAGCCCCTCGTAGTCCTGCCAGATCAGAAAATTCAACAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGTTGCTTGGAAGGGGAACGTTTGGACATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAGAAGTTACAATGCTTAGTCGGTTGCAGCATCCAAATATTGTTCAGTATTATGGATATGAGACGGTAGATGACAAACTTTATGTATACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAGCTGGTTAAAGAATATGGCCAGTTAGGTGAAATTGCTATTCGTAATTATACTCAGCAAATTCTGTTAGGACTTGCATATTTGCACGCTAAGAACACTGTTCACAGGGACATTAAAGGAGCAAACATATTGGTGGACCCTTGTGGGCAGATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGCGGGTCATCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTAGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAATATGAAGGGGTTGCTGCTTTGTTTAAGATTGGGAATAGCAAGGAACTTCCTACAGTTCCAGATCATCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGTTTGCAAAGGAATCCTCTAAATCGTCCCTCAGCTGCTCAACTTCTAGAGCATCCATTTGTTAAAAATGCTATGCTGGAAAGATCCATTTTAACTGCCGTTCCTTCAGAAGATCCAACTGCCATAATAAATGCAGTGAGATCTCTGGCCGTTGGACCTGCAAAACATAATTTATGCTTAGACTCAGAAGTGGCTGGGATCTATCCTCATAAAAGCTTGAGAACTGGTTCTGGATCAAGCGATGCTCATGCACCAAGGAACATCTCTTGTCCCGTTTCTCCCTCTTTGCCTCATAAATCATTGCATTCAAGTGGAAGGATGTCTCCTTCTCCAATATCCACCCCTTATACTGCATCTGGCTCATCTTCGCCACTAACCAGTGGTGGTGGTGCTATTCCATTTCATCAGACAAAGCAACCAATGTTGTCACATGAAGTTTTGGGTATAATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCGCCACTAACCAGTGGTGGTGATGGTGCTATTCCATTTCATAAGACAAAGCAACCAATATTGTCACATGAAGTTTTGCATATAATCCAAAAGTCTCAAAATGGTGCTATTCCAATATCTAGCCCTCGTATTGCATCTGGCTCATCTTTGCCATTAACCAGTGGCGGCGGTGGTGCTATTCCATTTCATCAGACAAAGCAATCACTATTTTCACATGAAGTTGTGGGTATGATCCAAAAGTCTCAGAATGGTGCTATTCCAACATCTAGCCCTCGTACTGTGTCTGGCTCATCTTCGCCACTAACCAGTGGTGGTGGTGCTGTCCCATTTCATCAGACAAAGCAACCAATATTGTCACATGAAGTTTTGCGTATAATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCGCCGCTAACCAGTGGCGGCGGTGCTATTCCATTTCATCAGATAAAGCAACCACTATTCTCACATGAAGTTGTGGGTATGATCCAAAAGTCTCAGAGTGGTGCTATTCCAATATCTAGCCCTCGTACTGTGTCTGGCTCATCTTCGCCACTAACTAGTGGAGGTGGTGCTATTCCATTTCATCAGACAAAGCAACCACTTTTCTCACATGAAGTTGTGGGTATGATCCAAAAGCCTCCGAATGGTTTTTATTCAAATGGAAATACTGCTTATCAGGGGTCTAAGCATGAGCAGTTTGGGAGTAACTTGCAAACTACACATGCTTGCCGGGATGTAGTTTCATCTGATAATGATGTTCTTCCAAACCATACTAGGAGGGCTGTCCAAGGAGACCCAACAGAACTTCGTGATAGGAACTACTTGGCTGATTGTGTGTCACAACAGTTGTTGAGGGATTATGTACGCCTAAATGCATGCCTGGATAATAAGCCCGATGCCCCAAATCCTGATCGCATTAACGGCTTATGA 3441 0.4292 MRLWWGKSSSSKEAKRKANRESIIDTIPKRNTNRESIIDTIQRKLKNTSEEKCNNKSGRSRRHRDDAISKKGSRSFGPSRSSSPSTHEFRSQSFSERPLSQPLPLPGSHLPAAIDVNSGVILTSKLERAIGSKPSLYFPLPKPAYVSNKEDPTDAEGDIVTASVSSDSSIDSGNSFDSPHLVSPLASDCENGNQATINSSFSVVHKNQSLITIQRNSRASSKPAPQLCNNKPLSTSPRGVPLHPQNLQIARPGGLCSAPNSSMSSPSRSPMGAFGPEQMLNSELQTGKPYPDIASGHCYNPVSGHNSVGGDISGQMILPQNRCSPECSPIPSPRITSPGPSSRIQSGTVTPLHPKAGGTAAEASTRRPDDVKQKNHQLAIPPITVTKSYSISPTYSASTTPSAPRSPARSENSTSPGSRWKKGKLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRESAQQLGQEVTMLSRLQHPNIVQYYGYETVDDKLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTQQILLGLAYLHAKNTVHRDIKGANILVDPCGQIKLADFGMAKHISGSSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAALFKIGNSKELPTVPDHLSEDGKDFVRLCLQRNPLNRPSAAQLLEHPFVKNAMLERSILTAVPSEDPTAIINAVRSLAVGPAKHNLCLDSEVAGIYPHKSLRTGSGSSDAHAPRNISCPVSPSLPHKSLHSSGRMSPSPISTPYTASGSSSPLTSGGGAIPFHQTKQPMLSHEVLGIIQKSQNGAIPISSPRTASGSSSPLTSGGDGAIPFHKTKQPILSHEVLHIIQKSQNGAIPISSPRIASGSSLPLTSGGGGAIPFHQTKQSLFSHEVVGMIQKSQNGAIPTSSPRTVSGSSSPLTSGGGAVPFHQTKQPILSHEVLRIIQKSQNGAIPISSPRTASGSSSPLTSGGGAIPFHQIKQPLFSHEVVGMIQKSQSGAIPISSPRTVSGSSSPLTSGGGAIPFHQTKQPLFSHEVVGMIQKPPNGFYSNGNTAYQGSKHEQFGSNLQTTHACRDVVSSDNDVLPNHTRRAVQGDPTELRDRNYLADCVSQQLLRDYVRLNACLDNKPDAPNPDRINGL 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 325 424 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 907 934 - -
Pumo6g00488 1146 ProSiteProfiles Protein kinase domain profile. 420 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00488 1146 Gene3D Transferase(Phosphotransferase) domain 1 418 700 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 958 978 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 74 99 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 812 831 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 1 106 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 907 936 - -
Pumo6g00488 1146 SMART serkin_6 420 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00488 1146 Pfam Protein kinase domain 421 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 379 419 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 36 71 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 729 790 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 1005 1030 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 958 979 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 9 28 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 748 788 - -
Pumo6g00488 1146 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Pumo6g00488 1146 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 63 700 - -
Pumo6g00488 1146 SUPERFAMILY Protein kinase-like (PK-like) 418 677 IPR011009 -
Pumo6g00488 1146 CDD STKc_MEKK1_plant 419 676 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 1005 1031 - -
Pumo6g00488 1146 FunFam Mitogen-activated protein kinase kinase kinase 418 700 - -
Pumo6g00488 1146 MobiDBLite consensus disorder prediction 812 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00488 Pumo-Chr6 6126052 6135160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00488 4 794 MAP Kinase Kinase Kinase AT1G63700 60.174 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo6g00488 Pkinase 6.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00488 K20717 - gmx:100814422 1528.46