Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g00480 | ATGGGCGGTTGCTGTTGTTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTATTATCAGTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCTCTGGCCGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCCATCCCTTTCAATGTTACGTTAACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTGGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTGGAGACAATCATGGGACCTCAGCTAAGTTGGAAGAGCTGAAGGAATCAGAGTGCAAAGTTCAGACTGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCGGGAAAACCTATAGATTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGAAGAGAATCCAAAACTCCTAACAAAATGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTATTCAACCCTCCCATTGATTAG | 639 | 0.4304 | MGGCCCCCSSKETVLSAPPAYYYQYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLTTQTPPAAQEIRGDKNNTSLHSTNSNAIQEPVAGDNHGTSAKLEELKESECKVQTDLELDSAKGSEIELAKSGKPIDLVEEEDTCPICLEEYDEENPKLLTKCDHHFHLACILEWMERSETCPVCDQDLVFNPPID | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g00480 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 207 | IPR013083 | - | |
| Pumo6g00480 | 212 | SMART | ring_2 | 161 | 201 | IPR001841 | - | |
| Pumo6g00480 | 212 | Pfam | Ring finger domain | 159 | 201 | IPR001841 | - | |
| Pumo6g00480 | 212 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
| Pumo6g00480 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 161 | 202 | IPR001841 | - | |
| Pumo6g00480 | 212 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 38 | 208 | - | - | |
| Pumo6g00480 | 212 | MobiDBLite | consensus disorder prediction | 85 | 113 | - | - | |
| Pumo6g00480 | 212 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 138 | 206 | - | - | |
| Pumo6g00480 | 212 | SUPERFAMILY | RING/U-box | 155 | 208 | - | - | |
| Pumo6g00480 | 212 | CDD | RING-H2_AIRP1-like | 157 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g00480 | Pumo-Chr6 | 6004560 | 6007105 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo6g00480 | 1 | 212 | C3H Transcription Factor Family | AT5G41350 | 53.241 | 1.64e-68 | 207 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g00480 | - | - | gmx:100816369 | 410.223 |