Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00478 ATGTCTTCTGATCTCTACGCTTATGACACCACCTTATACACACATTCAAACTCAGACTTGGTTTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCTGACTCTTTTCCTTTCTTCGCCAATTCTCCCTCTAATGTAGTTCAAGAGAATAATGCTCTTTCTTCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTCAGTCTTTACCATGCCAACCGCGTGCAGCCTCTGTCAAACGGCCAAAACTTGGCAAATGAATTTGGAAGCTTCTCAGCCTTTGATGGGTCTGAAGTGAAAAGTGAGGAATGCCAAATGGGTGCTGATTATGTCTACGGTCAGCAACAACTCCTTCCTCACAGTTGTAGTGGTGCTGAGAATTTTTCCAAGTACATGCAGAGGAGCTTCAGCAGCAACTCTTTTGAAGGGAAACCCGGTTTTTTGTCACAACCCTACAGTGATACTGTCGTGGATTCTCCAAAATTTCAAAGGAACGACATGAGTTCACCTGAAGCCAGTGTCTTCGGTGGACAAATGAGGAGGGTTTGCAGCACAGGAGATTTGCAGCAGAACATGAAGGGAAATCACATGTCTCCAACGGAGGTGCCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAACCCAGAGGAACTTCAACAAGACCATTAAGTATGCATGCCGAAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTTGCCCGCAACGACGAGGCCAGCGAGACTCCCAAGGCTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGATTGAAGAATTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGAGCAGAACAGTATTTGAGAAATTATGGAGCTAGCCAGTTTCAATATGGCTTTTGA 981 0.4536 MSSDLYAYDTTLYTHSNSDLVSSDGVGDLPFLSDSFPFFANSPSNVVQENNALSSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGQNLANEFGSFSAFDGSEVKSEECQMGADYVYGQQQLLPHSCSGAENFSKYMQRSFSSNSFEGKPGFLSQPYSDTVVDSPKFQRNDMSSPEASVFGGQMRRVCSTGDLQQNMKGNHMSPTEVPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEASETPKASCSTRDEDDVDFWIEELRLHEEQDDVTVGAEQYLRNYGASQFQYGF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00478 326 Pfam CCT motif 229 271 IPR010402 GO:0005515
Pumo6g00478 326 ProSiteProfiles CCT domain profile. 229 271 IPR010402 GO:0005515
Pumo6g00478 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 43 291 IPR045281 GO:0009909
Pumo6g00478 326 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00478 Pumo-Chr6 5979764 5981830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00478 225 277 C2C2-CO-like Transcription Factor Family AT5G24930 49.057 9.49e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo6g00478 CCT 9.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00478 - - gmx:102665661 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02334 8 60598130 60600386 Pumo6g00478 6 5979764 5981830 PCT