Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00475 ATGTCCATAAATAAATTGATAGCCTATTCCCATTGTTGCCATTTGAACCTCAAACTCTTGTTCATCTATATAACGCACCTTGTGGTTCTCTCTCTCTCTCTCACTTTCCCACAGAAAGAAAGAAAGAAAGAAGAAAGAGTGATCTCACTGATGGGTTTCCCAGTGGGGTACTCGGAGCTCCTCTTCCCGAAACTTCTTCTCCACATCCTGTCCCTCTTGGGCTTTCTGAGGAAGCTGATTTGCGGGCTCCTCCGGTTCATGGGCCTGCACGATTTCCTGGAGCCCGACATTGCGTGGGCCGAGACCCAGACCGGAATGGCGGAATTGGAATCGGTGTCGGCGACGCTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCGGGGAGCTGGTGGACCCGCCGGAGACGTGCGCGGTGTGTCTGAGCGAGTTCGAGGAAAACGATGAGATAAGACGGCTGGCGAATTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACCTGCCCTCTTTGCAGAACGCCCTTTATACCCGACGAAATGCAAGCTGCTTTTATTGAGAGACTCTGGGCTGCCTCTGAATATCCACACGTTGCTCCTTTGTAG 624 0.5208 MSINKLIAYSHCCHLNLKLLFIYITHLVVLSLSLTFPQKERKKEERVISLMGFPVGYSELLFPKLLLHILSLLGFLRKLICGLLRFMGLHDFLEPDIAWAETQTGMAELESVSATLIREILPVVKFGELVDPPETCAVCLSEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDEMQAAFIERLWAASEYPHVAPL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00475 207 SUPERFAMILY RING/U-box 116 185 - -
Pumo6g00475 207 ProSiteProfiles Zinc finger RING-type profile. 136 179 IPR001841 -
Pumo6g00475 207 Pfam Ring finger domain 135 179 IPR001841 -
Pumo6g00475 207 SMART ring_2 136 178 IPR001841 -
Pumo6g00475 207 SMART ringv_2 135 179 IPR011016 GO:0008270
Pumo6g00475 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 182 IPR013083 -
Pumo6g00475 207 PANTHER RING ZINC FINGER PROTEIN-RELATED 74 200 - -
Pumo6g00475 207 CDD RING-H2_RHA1-like 136 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00475 Pumo-Chr6 5956378 5957376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00475 51 200 C3H Transcription Factor Family AT1G63840 56.774 4.87e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00475 K16281 - gmx:100817079 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02336 8 60608437 60609718 Pumo6g00475 6 5956378 5957376 PCT