Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00474 ATGGCAACGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCAGCCCACCAACACCAAGCCCAAACGACGCAAGTATCGGGAAACTACCATCTCCGCTTCCGCCTCTCCCTCTCCCTCTCCAAACGACACCCCGCAGCGCCGCACTCCCGATTCCCCTTTATGCCCCGAACCCGAATCCGAACCAGCATTGCCCGAATCTCCCTCCACCTACAGGATCCGCTTCTCCCCGGGGCGGTTCTCCCCAATAATGGACTTCACTCACTCTTCCCCCACATCAAACGGGCACCACTCCCAGTCCCAGGACCCCTTCCCTTCGAGCTTCTCCAAGTTCAACTCCGCCCTCACCGCGGGCCTCTTAAACCCAATGTCCCCCCCGCCCGACAAGACCCGATCCAGCCCAACTCTCTTCGAAATGATGGCCAGCGAGCCCGATATCCACCACAGGCCCACCACCCAGATCCCGCCCAACACCGCCAACGCTTCCTCCGTCCACAAACCCCAAATTCTTGATCGCCAGGCCCTCATGATGCAGCGGATTTCGGAACTTCTCGGCTCTCGCAGCCCCGGGAACCAGTTCAACGACGCCGTTTCCAGCGACATTAAGCTCACTCTCAGCTCCAAAGACGGAATTAGTGTCTCCATGAACGTGCACCGCCAAATCCTCGTTGCTCACAGTAGGTTCTTCTCGGTCAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCGCTCCCCGGTGCCCTACGAAGTTGAAATTGCAGATTGCGACGATGTTGAGGTTTATATCGAGACGTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGAGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGGTTTCAGCTGCGATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCAGCACCGTGGGCGGAGGATGAAGAGGAGAAGGTGGCATCGCTCCTGTCTGAGCTTCGTCTTGAATCAGTTGGAGCTGGGGAGGTTTTGAAGAGGGTTTCCACTGATGTTGCCAATGGAACTGAAGAGGGGAGTGATAACGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGGAAGGATGAGAAAGCCAGGCGCGAGATGAAAGGCTTAGTGTCGAAGATGCTGCGTGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCATTGTACTTGGCATGTGATGACTGTCTGCAGTTACTTCGTCACCACTTTTTGCAGGCTGCGGCTTCAGACCTGCAGGATGTTAGTCAAATTGCAAGACAAGCGGATAATTTGCATTGGATTTTGGATATTTTAGTTGACAGACAGATTGCTGAGGATTTCCTGAAAACATGGGCATCTCAATCTGATTTAGCTGAAGCTCATTCTAAAGTGCCAGCAGTTCACAGGTTTGAGGTAAGCAGGGTTACAGCAAGGTTGTTTGTTGGGATTGGGAAAGGACAATTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTGCTAAAAACATGGCTAGTGCCCTTTTATGATGATTTTGGTTGGATGAGGAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACGATTCTCACTCTGCCACTCTCCTGGCAACAGGATATTTTGCTTGCTTGGTTTAATCGATTCTTGAATTCTGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCGGTTGAGAACCCTTGA 1815 0.5063 MATTTTTTFLKLQNQQPTNTKPKRRKYRETTISASASPSPSPNDTPQRRTPDSPLCPEPESEPALPESPSTYRIRFSPGRFSPIMDFTHSSPTSNGHHSQSQDPFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDIHHRPTTQIPPNTANASSVHKPQILDRQALMMQRISELLGSRSPGNQFNDAVSSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLESVGAGEVLKRVSTDVANGTEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLYLACDDCLQLLRHHFLQAAASDLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQSDLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00474 604 MobiDBLite consensus disorder prediction 1 111 - -
Pumo6g00474 604 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g00474 604 MobiDBLite consensus disorder prediction 84 111 - -
Pumo6g00474 604 Pfam BTB/POZ domain 194 287 IPR000210 GO:0005515
Pumo6g00474 604 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 180 590 IPR038920 -
Pumo6g00474 604 Gene3D Potassium Channel Kv1.1; Chain A 177 312 IPR011333 -
Pumo6g00474 604 ProSiteProfiles BTB domain profile. 200 278 IPR000210 GO:0005515
Pumo6g00474 604 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00474 Pumo-Chr6 5937376 5941736 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo6g00474 BTB 0.00037 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00474 - - ccaj:109800730 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00474 6 5937376 5941736 Pumo6g00474 6 5937376 5941736 ECH
Pumo6g00474 6 5937376 5941736 Pumo10g01693 10 22308382 22310992 PCT