Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00473 ATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCAACTGGGTTGTTCTACTCAGATGTGTCATCCAATAACCCAACAATTCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCAACACAATGAAACCAACGGTGCCATGTGGAAAAGTTTCTTCGCCAAACCAGGTCAACACGCGGGTCCTTCCTCTTCCAAAACGATGAACGAGTCTTCTACCAATTTTTATAACCAGCATGAGTATAATAATAACAAGCAAGACTTCACATCAGGGATTTCTGAGACAAGTAGCGAGAACTTAATTGTCGGTGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATGGTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAAGTAACGAAAGGCCGAGTCAAGGCCTTTCACTCTCTCTTTCTTCAACCAACCCTTCAAGTATTGGCTTGCAATCTTTTGAGCTGAGACAAACAAGCCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGGTTTTTTGGAAAACCAGTCAATGCTCAACAACAACAAATGTTGCAAGATGGGTATATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGACATTTCTTAATCAAGCATTCCAAGTTCTTGGTACCTGCACAGGTCCTTCTGAACGAGTTTTGTAGCCTAGGGACAAAGGAAAATGATGTGCCAAAGCAAAAGTACTCTCAAAAGAACAAGCAGTGGGAAGAGGGTAATAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTTGAGTTTGTTGAATTGCAGAAGAGAAAGACAAGGCTGCTCTCGATGCTGGAAGAGGTTGATAGAAGATACAAACACTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAATGGTGCAGCCACTGTTTACTCAGCGTTGGCTTTGAAAGCCATGTCAAGACATTTTAGGTGTTTGAAGGATGGAATTATGGATCAAATTCAAGCCACAAGAAAAGCCATGGGAGAGAAAGACCCCGTTGCACCAGGCACAACAAGGGGCGAAACACCAAGGCTTAGAATCATTGATCAATCACTGAGACAACAAAGGGCATTTCAGCAAATTAGCATGATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTTTCATTTCTTCGAGCTTGGCTTTTCGAGCACTTTCTCCATCCGTACCCAAGTGATGTTGATAAACATATCCTAGCCCGCCAAGCCGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCGATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGCAACAAAACGACGTAGCATCGTCGGAGGGAGGTGGAGGAGGCACCGATAATATTATTCCGGAAGAGGATCAAAACGCGCCACGCGAGGATCAGAAGCCAACGCAGGCTCGGCTCCTTCGAATTGACTCAGAGTGCGTGTCGTCCATCATAAACAACTCGGATCACAGAAACGACACGAAGAGCGGCAAAAGCATCCAAAACGACAACCAAATGGACACGTTCGGGTCGGTGGAGCTTGACTTTTCGTCGTACACGCAGCACTCGTCCGGCATGGTTCCTTACGGGGGCGTGTCGTTGACGCTGGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGGAGCAACACAGAGCTCGATGTTTTACCCACGGGACCAGATTGAAGAGTGTCAAAACAGTTCAGTACTCTCTTTTGGATGGTGA 1890 0.4683 MARQLCEDKSKDMASSTGLFYSDVSSNNPTIQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLQQHNETNGAMWKSFFAKPGQHAGPSSSKTMNESSTNFYNQHEYNNNKQDFTSGISETSSENLIVGGGAHDSAPWQENRLMVDDSSLRCVFPCESNERPSQGLSLSLSSTNPSSIGLQSFELRQTSHHQHLSDFVSREGFFGKPVNAQQQQMLQDGYMSPNKAANIYQGHFLIKHSKFLVPAQVLLNEFCSLGTKENDVPKQKYSQKNKQWEEGNNGGGSSKNHSLSSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDQIQATRKAMGEKDPVAPGTTRGETPRLRIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSFLRAWLFEHFLHPYPSDVDKHILARQAGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGGGTDNIIPEEDQNAPREDQKPTQARLLRIDSECVSSIINNSDHRNDTKSGKSIQNDNQMDTFGSVELDFSSYTQHSSGMVPYGGVSLTLGLQQQGESGVSLAFPPGATQSSMFYPRDQIEECQNSSVLSFGW 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00473 629 MobiDBLite consensus disorder prediction 272 287 - -
Pumo6g00473 629 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Pumo6g00473 629 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 499 - -
Pumo6g00473 629 MobiDBLite consensus disorder prediction 507 521 - -
Pumo6g00473 629 FunFam BEL1-like homeodomain protein 4 416 478 - -
Pumo6g00473 629 MobiDBLite consensus disorder prediction 264 287 - -
Pumo6g00473 629 SMART prehox3 230 362 IPR006563 -
Pumo6g00473 629 SMART HOX_1 413 477 IPR001356 GO:0003677
Pumo6g00473 629 SUPERFAMILY Homeodomain-like 414 479 IPR009057 -
Pumo6g00473 629 Gene3D - 416 478 - -
Pumo6g00473 629 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Pumo6g00473 629 CDD homeodomain 413 474 IPR001356 GO:0003677
Pumo6g00473 629 MobiDBLite consensus disorder prediction 535 555 - -
Pumo6g00473 629 Pfam Associated with HOX 236 360 IPR006563 -
Pumo6g00473 629 MobiDBLite consensus disorder prediction 482 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00473 Pumo-Chr6 5920214 5923654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00473 140 618 Homeobox Transcription Factor Family AT5G41410 46.893 4.14e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo6g00473 POX 4.8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00473 - - gmx:100787954 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02339 8 60637922 60642119 Pumo6g00473 6 5920214 5923654 PCT