Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00467 ATGATCATTCCGGAGAAAAACCGTAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTCTCGCGAGTACGTGAGGGAGACTTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGATGGCATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAACAGGCCAAGCCACCTGGCAGGCCCTTTGGGGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGAAGGGGAGCGTAGGTTTGGTGGTGATCGTGATGGATACCGAGGAGGTCCTCGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCTCTTTTGGGGTAATCTTATTGCCACTGCACTTCCTCTGTTGCTGTTTAATGTTTAGTGTAATCATGATTGCCATTTGTTTGTGGCCTAGTTTGGGTCATCATTGTTTGCTGTCCTTCATTAGATTGGATAAGTTTGATATGTTATGTACTTATAGGTTGCTTCCAATGGAAAGAAATGATTTATATTTTAGCTCAGTTTGGATTAGCTTTTAA 672 0.4643 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGVILLPLHFLCCCLMFSVIMIAICLWPSLGHHCLLSFIRLDKFDMLCTYRLLPMERNDLYFSSVWISF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00467 223 PANTHER 40S RIBOSOMAL PROTEIN S10 1 156 IPR037447 -
Pumo6g00467 223 MobiDBLite consensus disorder prediction 112 128 - -
Pumo6g00467 223 Pfam Plectin/S10 domain 3 94 IPR005326 -
Pumo6g00467 223 MobiDBLite consensus disorder prediction 93 143 - -
Pumo6g00467 223 Gene3D - 1 104 IPR036388 -
Pumo6g00467 223 FunFam 40S ribosomal protein S10 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00467 Pumo-Chr6 5859513 5861500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00467 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 82.581 1.76e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00467 K02947 - gmx:100499910 216.468