Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00465 ATGGAGATCTGGGTCCCTTGCATGGACCCCACATCAGGTTCTGAATGTATGTCGGCTAGGGCATGTACTTTTAAAGGAGGGAAGAAAGAGAGTCTTAACTATTGCACACAAATCCCCATTTATTTGATCAAGGCAATACAAGCCCACTTAGGGAACAAGAACACAAAAGAAGAAGACGACATAGCAAAGCCTAGAAATATGGGTCACCATTCCTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCCGAGGAAGATGAAAAACTCATCAGATACATCACAACTCATGGATATGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCTGATATTAGAAGAGGCAGATTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACTGACAATGAGATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCGGTGTCTTCAACCACCATTGCACAAAGTATCGATCACAATTCTTCCCAGTTCAATTACAATTCCAATCTACTAGACCATTTTCCCAACCAAAATAACAACAATCTACAAACAAAACCACCAGTTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTTGACACTACGACTAGTTCACTAGAAGGCACAGCCGCAACAGACTGCAATAGTACTGTGCGAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACTTGGAACTTGAGCCACCATCAGGTTCATGCACTTCCTCCTCTCACAGTGAGTGTAGGTCTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCAATTGAGGTACAATCTTGTACCATGGATGAGCAGGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGCTAAATGAATGGGTGGAAACGCAGCTAACAATGTCCTAA 1047 0.4317 MEIWVPCMDPTSGSECMSARACTFKGGKKESLNYCTQIPIYLIKAIQAHLGNKNTKEEDDIAKPRNMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNSSQFNYNSNLLDHFPNQNNNNLQTKPPVQETLFSSTCPLFMFDTTTSSLEGTAATDCNSTVRAEHFQDAVGLSTETWNLSHHQVHALPPLTVSVGLDTTNYLPPLIENVDNMVPIEVQSCTMDEQGDIALECLQRQGLNEWVETQLTMS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00465 348 CDD SANT 83 127 IPR001005 -
Pumo6g00465 348 PANTHER MYB DOMAIN PROTEIN 55 67 246 - -
Pumo6g00465 348 ProSiteProfiles Myb-like domain profile. 128 178 IPR001005 -
Pumo6g00465 348 FunFam Transcription factor MYB26 134 203 - -
Pumo6g00465 348 Pfam Myb-like DNA-binding domain 80 127 IPR001005 -
Pumo6g00465 348 Pfam Myb-like DNA-binding domain 133 177 IPR001005 -
Pumo6g00465 348 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Pumo6g00465 348 CDD SANT 135 178 IPR001005 -
Pumo6g00465 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 182 IPR017930 -
Pumo6g00465 348 Gene3D - 134 208 - -
Pumo6g00465 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 127 IPR017930 -
Pumo6g00465 348 FunFam MYB transcription factor 72 132 - -
Pumo6g00465 348 SMART sant 79 129 IPR001005 -
Pumo6g00465 348 SMART sant 132 180 IPR001005 -
Pumo6g00465 348 SUPERFAMILY Homeodomain-like 77 174 IPR009057 -
Pumo6g00465 348 Gene3D - 71 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00465 Pumo-Chr6 5839349 5842463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00465 67 344 MYB Transcription Factor Family AT1G63910 54.573 2.35e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g00465 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00465 K09422 K02947 gmx:100803556 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02347 8 60693223 60695605 Pumo6g00465 6 5839349 5842463 PCT