Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00457 ATGGACGAGAACGTGCTCGACGATATTATCCGGAGGCTCGTTGCGGCGAAGAACGGTAGAACGACGAAGCAGGTGCAGCTTACGGAGGCGGAAATTCGACAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGCTGTTCGAATATGGGGGATACCCACCTGAAGCAAATTATTTATTTCTCGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTCGCATACAAGATCAAATACAAGGAGAATTTCTTTCTTCTCAGGGGCAACCATGAGTGTGCATCCATCAATCGTATATATGGTTTCTATGATGAGTGTAAGAGGAGGTTTAATGTTCGCCTCTGGAAGACATTTACTGATTGCTTCAATTGTCTACCTGTTGCTGCTCTGATAGATGAGAAGATCCTTTGCATGCATGGCGGACTATCGCCTGATCTTAAACACTTGGATCAGATACGGAGTATTGCTCGTCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTATGGGCTGATCCTGATAAAGATCTTGATGGGTGGGGAGAAAATGACCGAGGTGTGTCATTTACATTTGGGGCTGACAAGGTTGTTGAATTTCTTGAACAACATGATCTCGATCTGATTTGCAGAGCTCACCAGGTTGTAGAGGATGGATATGAGTTTTTTGCCAAGCGGCAGCTGGTGACTATATTCTCTGCACCAAACTACTGTGGTGAATTTGACAATGCTGGTGCTATGATGAGTGTGGATGACACCTTGACATGCTCTTTCCAAATACTTAAATCTTCTGAAAAGAAAGGTAAAGGTGGATTTGGCAACAACACATCAAGACCGGGAACTCCACCCCATAAGTGCAGAGCCTGTGTTGTGAGGGGCATGAGTGAAATGGCTACGCTCTTTGGGGCAATTTCTCTGAACGAGGTTCATACCTTCACGTGGTCAAGGAGTTCTGGTGTTTGTTGA 1062 0.4463 MDENVLDDIIRRLVAAKNGRTTKQVQLTEAEIRQLCVSSKEIFLSQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLKHLDQIRSIARPIDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEQHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSEKKGKGGFGNNTSRPGTPPHKCRACVVRGMSEMATLFGAISLNEVHTFTWSRSSGVC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Pumo6g00457 353 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Pumo6g00457 353 FunFam Serine/threonine-protein phosphatase 1 303 - -
Pumo6g00457 353 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Pumo6g00457 353 Gene3D - 1 305 IPR029052 -
Pumo6g00457 353 SUPERFAMILY Metallo-dependent phosphatases 22 297 IPR029052 -
Pumo6g00457 353 CDD MPP_PP1_PPKL 5 294 - -
Pumo6g00457 353 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
Pumo6g00457 353 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Pumo6g00457 353 SMART pp2a_7 27 297 IPR006186 GO:0016787
Pumo6g00457 353 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00457 Pumo-Chr6 5718468 5721991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00457 56 243 Calmodulin-binding Proteins AT5G63870 29.596 2.94e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00457 K06269 - gmx:100783178 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00457 6 5718468 5721991 Pumo6g00457 6 5718468 5721991 ECH