Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00447 ATGGGCAACTGCAGCAGTGGCAGCGGAGCCGCCACAACCACCACCACCACCGCCGCTTACTCCGACGACCATCCCGGCCGCAACGGCATCACCGTCCTCCCTCCGAACTCGAACTCTTCTCCTCCACCGACCGTCCCCTCCTCGCTGGGCCGCGTTTTGGGCCGGCCCATGGAGGATGTCCGGTCCATTTACATCTTCGGTCGCGAGCTGGGCCGGGGTCAGTTCGGCGTGACGTATCTGGTGACTCACAAGGCCACTAAGGAGCAGTTCGCGTGCAAGTCAATCGCGACGCGGAAGCTGGTGAACCGCGACGACATCGACGACATTCGGCGCGAGGTGCAGATCATGCACCACCTCACGGGCCACCGCAACATCGTGGAGCTCAAGGGCGCCTACGAGGATCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGGATCATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTCACCGTCGTCCACAACTGCCACTCCATGGGAGTCATGCACAGGGACCTCAAGCCCGAGAATTTCTTGTTGCTCAGCAAGGACGACCATTCGCCCCTCAAGGCCACCGATTTTGGTCTCTCCCTCTTTTTCAAGCCAGGAGATGTGTTTAGAGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGAGAAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCTGGAGTTATATTGTACATTCTGCTTTCTGGTGTTCCACCTTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCTTCGGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGTTGAAGTACTAAATCATCCCTGGATGAGAGTGGATGGAGATGCATCTGATAAGCCTCTTGATATCGCTGTTTTATCCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAAAAAGTAGCCCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACATTTGAAGAGTTGAAAGCTGGTCTCCCAAAATTGGGTAGTAAACTTTCTGAGTCTGAAGTTAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGGTACATTACAATGGAAGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGTGACGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGTAGTTACTTTCTTTTTACTTTATTTTATTTCTTTATATCTGTCTCTATATTTTCTTAACATAATCACATGTAACAATAATGTCATTCCTAAAAATGCTGTAACTATATTGTTTGTTGGGTAA 1587 0.4839 MGNCSSGSGAATTTTTTAAYSDDHPGRNGITVLPPNSNSSPPPTVPSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSKDDHSPLKATDFGLSLFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNVVTFFLLYFISLYLSLYFLNIITCNNNVIPKNAVTILFVG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00447 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Pumo6g00447 528 Pfam EF-hand domain 442 468 IPR002048 GO:0005509
Pumo6g00447 528 FunFam Calcium-dependent protein kinase 1 330 498 - -
Pumo6g00447 528 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Pumo6g00447 528 FunFam calcium-dependent protein kinase 1 150 329 - -
Pumo6g00447 528 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Pumo6g00447 528 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
Pumo6g00447 528 Gene3D - 348 488 - -
Pumo6g00447 528 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Pumo6g00447 528 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00447 528 SUPERFAMILY EF-hand 361 488 IPR011992 -
Pumo6g00447 528 Gene3D - 338 431 - -
Pumo6g00447 528 Pfam Protein kinase domain 66 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00447 528 SUPERFAMILY Protein kinase-like (PK-like) 36 341 IPR011009 -
Pumo6g00447 528 CDD STKc_CAMK 64 321 - -
Pumo6g00447 528 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Pumo6g00447 528 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Pumo6g00447 528 CDD EFh 370 429 IPR002048 GO:0005509
Pumo6g00447 528 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Pumo6g00447 528 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Pumo6g00447 528 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Pumo6g00447 528 MobiDBLite consensus disorder prediction 1 52 - -
Pumo6g00447 528 MobiDBLite consensus disorder prediction 1 22 - -
Pumo6g00447 528 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00447 528 SMART efh_1 369 397 IPR002048 GO:0005509
Pumo6g00447 528 SMART efh_1 405 433 IPR002048 GO:0005509
Pumo6g00447 528 SMART efh_1 441 469 IPR002048 GO:0005509
Pumo6g00447 528 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Pumo6g00447 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 488 - -
Pumo6g00447 528 FunFam Calcium-dependent protein kinase 1 66 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00447 Pumo-Chr6 5552629 5559198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00447 50 487 EF-hand Containing Proteins AT4G23650 81.963 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo6g00447 Pkinase 2.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00447 K13412 - gmx:100777096 895.19