Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00435 ATGGAATTTCTACCCATTTTCTCTTCCATTTCCCTTTTGTTGTGTTTGGTTCTGTGGCAAGGAAGTGGTGAACCTGTTGAAGATAAGGAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGATTCTTGGACTGGAGTGACTTGCAATGTAGACAAGTCCAAAGTAATAGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCAGTATTCCACCTGATACTATTAGCCGCCTCTCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATTACTGGGCATTTTCCTTCTGATTTTTCCAATCTGAAGAACTTGTCTTTTCTGTACCTTCAGTTCAACAACTTATCTGGGCCTTTGCCTGATTTCTCAGCCTGGAAGAATTTCACTGTTGTTAACTTGTCCAATAACCATTTCAATGGCAGCATCCCTTCCTCCCTTAACAACTTAACTCAGCTAGCTGGTTTGAACCTTGCAAACAACACTCTTTCTGGAGAAATTCCTGACCTCAACTTGTCAAGATTGCAGGTGCTGAACTTGTCCAACAACAACTTGCAGGGCAGTGTGCCTAAATCCCTGCTAAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAAGTTTTCCCACGGTTTCTCCGGCGCCTCAACTGGATTATGAGCCGTCTTTGAAGTCCAGGAAGCGTGGAAGGCTCAGCGAAGCGGCGCTGCTGGGAGTTATTGTTGCTGCTGCTATTTTAGGCCTCGTGGCTTTTGTTTCTTTGATGTTTGTGTGCTGCTCAAGAAGAGGTGATGAGGATGAGGAAACCTTCAGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCAGTTTCAAGGAACCAGGATGCAAATAATAAACTGGTTTTCTTTGAGGGGTGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGCTGGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTTGAGGATGCAACTACGGTTGTTGTGAAGAGGTTGAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAGCACATGGAGATTGTAGGAAGTCTTAAGCATGAGAATGTGGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTACCACAGTCAGGGGAGCATCTCTTCCATGTTGCATGGCAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATACTCGGCTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAATGGTGGCAAGCTTGTACATGGCAACATCAAATCCTCAAACATCTTTCTCAATACCAAGCAGTATGGCTGTGTGTCTGACCTTGGCCTGGCAACCATATCAAGCTCACTTGCTTTACCAATCTCACGAGCAGCCGGTTATCGTGCACCCGAAGTTACAGACACCAGAAAAGCAGCACAGCCCTCAGATGTTTACAGCTTTGGTGTGGTGTTGCTAGAGCTTCTGACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATTCACCTAGTAAGGTGGGTTCATTCAGTTGTGCGCGAGGAGTGGACAGCTGAAGTGTTTGACTTAGAGCTGATGAGATATCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAGAGGCCTAAGATGTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATGCAGAGACTCACTCATCATCTGGGAACCAAGCAGAACAAGGTAAATTTTCTCAACTTGACAATGGTAACTCTCCTTCCACTCCCTCCTACTTCCCAAGAGGAAGTGAATGA 1917 0.4523 MEFLPIFSSISLLLCLVLWQGSGEPVEDKEALLDFVNKFPPSRPLNWNESSPMCDSWTGVTCNVDKSKVIAIRLPGVGFHGSIPPDTISRLSALQTLSLRSNVITGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNFTVVNLSNNHFNGSIPSSLNNLTQLAGLNLANNTLSGEIPDLNLSRLQVLNLSNNNLQGSVPKSLLRFPESAFSGNNISFGSFPTVSPAPQLDYEPSLKSRKRGRLSEAALLGVIVAAAILGLVAFVSLMFVCCSRRGDEDEETFSGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSISSMLHGKRGEDRVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDAETHSSSGNQAEQGKFSQLDNGNSPSTPSYFPRGSE 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00435 638 PANTHER OS05G0588300 PROTEIN 6 608 - -
Pumo6g00435 638 FunFam pollen receptor-like kinase 1 296 401 - -
Pumo6g00435 638 Gene3D Ribonuclease Inhibitor 138 229 IPR032675 -
Pumo6g00435 638 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Pumo6g00435 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 609 - -
Pumo6g00435 638 ProSitePatterns Protein kinases ATP-binding region signature. 333 364 IPR017441 GO:0005524
Pumo6g00435 638 Pfam Leucine rich repeat 82 128 IPR001611 GO:0005515
Pumo6g00435 638 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Pumo6g00435 638 Gene3D Phosphorylase Kinase; domain 1 293 401 - -
Pumo6g00435 638 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Pumo6g00435 638 MobiDBLite consensus disorder prediction 604 638 - -
Pumo6g00435 638 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00435 638 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00435 638 SUPERFAMILY L domain-like 38 208 - -
Pumo6g00435 638 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
Pumo6g00435 638 Gene3D Transferase(Phosphotransferase) domain 1 403 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00435 Pumo-Chr6 5454169 5458485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00435 17 616 Receptor kinase-like Gene Family AT4G23740 66.232 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo6g00435 Pkinase 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00435 - - gmx:100804799 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02381 8 61012875 61015890 Pumo6g00435 6 5454169 5458485 PCT